Mir-194-P4c

MirGeneDB ID

Xla-Mir-194-P4c

Family name

MIR-194 (all species)

Seed

GUAACAG

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-194-2

Paralogues

Xla-Mir-194-P2a Xla-Mir-194-P2b Xla-Mir-194-P4d

Orthologues

Aca-Mir-194-P4 Ami-Mir-194-P4 Bta-Mir-194-P4 Cfa-Mir-194-P4 Cja-Mir-194-P4 Cpi-Mir-194-P4 Cpo-Mir-194-P4 Dno-Mir-194-P4 Eca-Mir-194-P4 Ete-Mir-194-P4 Gja-Mir-194-P4 Hsa-Mir-194-P4 Lch-Mir-194-P4 Loc-Mir-194-P4 Mml-Mir-194-P4 Mmr-Mir-194-P4 Mmu-Mir-194-P4 Mun-Mir-194-P4 Neu-Mir-194-P4 Oan-Mir-194-P4 Ocu-Mir-194-P4 Pab-Mir-194-P4 Pbv-Mir-194-P4 Rno-Mir-194-P4 Sha-Mir-194-P4 Spt-Mir-194-P4 Sto-Mir-194-P4 Xtr-Mir-194-P4

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030730.1: 23104037-23104095 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-194-P4c)

Mir-194-P4c NC_030730.1: 23104037-23104095 [+] UCSC Ensembl
Mir-192-P4c NC_030730.1: 23107083-23107143 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AACCUCAUGGAGACACUGAUGGUCAUCACUUGUAACAGCAACUCCAUGUGGAAGUAGAUAUAAUAUUCCGGUGGAGAUGCUGUUAUCUGUAAUGUGCAUCUUAUUCUUCAAGUGAUAUU

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Structure

        10          20        30        40        50         
AACCUCAUGGAGACACU--|   GU   C  UU         A      G     GUAGA 
                   GAUG  CAU AC  GUAACAGCA CUCCAU UGGAA     U
                   CUAC  GUA UG  UAUUGUCGU GAGGUG GCCUU     A
UUAUAGUGAACUUCUUAUU^   GU   A  UC         A      -     AUAAU 
       110       100        90        80         70        60

Deep sequencing

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3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Em

Mature sequence

Xla-Mir-194-P4c_5p

mirBase accession

MIMAT0046508

Sequence

0- UGUAACAGCAACUCCAUGUGGAA -23

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Star sequence

Xla-Mir-194-P4c_3p* (predicted)

mirBase accession

MIMAT0046509

Sequence

37- CCGGUGGAGAUGCUGUUAUCUG -59

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