Mir-194-P4

MirGeneDB ID

Rno-Mir-194-P4

Family name

MIR-194 (all species)

Seed

GUAACAG

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-194-2

Paralogues

Rno-Mir-194-P2

Orthologues

Aca-Mir-194-P4 Ami-Mir-194-P4 Bta-Mir-194-P4 Cfa-Mir-194-P4 Cja-Mir-194-P4 Cpi-Mir-194-P4 Cpo-Mir-194-P4 Dno-Mir-194-P4 Dre-Mir-194-P4a Dre-Mir-194-P4b Eca-Mir-194-P4 Ete-Mir-194-P4 Gja-Mir-194-P4 Gmo-Mir-194-P4a Gmo-Mir-194-P4b Hsa-Mir-194-P4 Lch-Mir-194-P4 Loc-Mir-194-P4 Mal-Mir-194-P4a Mal-Mir-194-P4b Mml-Mir-194-P4 Mmr-Mir-194-P4 Mmu-Mir-194-P4 Mun-Mir-194-P4 Neu-Mir-194-P4 Oan-Mir-194-P4 Ocu-Mir-194-P4 Pab-Mir-194-P4 Pbv-Mir-194-P4 Sha-Mir-194-P4 Spt-Mir-194-P4 Sto-Mir-194-P4 Tni-Mir-194-P4a Tni-Mir-194-P4b Xla-Mir-194-P4c Xla-Mir-194-P4d Xtr-Mir-194-P4

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr1: 221634800-221634857 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-194-P4)

Mir-194-P4 chr1: 221634800-221634857 [+] UCSC Ensembl
Mir-192-P4 chr1: 221634994-221635058 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGUGCUCUGACCCCCAUGGCUCCCACCCCCUGUAACAGCAACUCCAUGUGGAAGUGCCCACUGAUUCCAGUGGGGCUGCUGUUAUCUGGGGUGGAGGCUGGUGCCUGCAGAGGAGGAG

Get precursor sequence

Structure

        10          20        30        40        50         
UGUGCUCUGACCCCCAU--|  UC       CU         A      G     GUGCC 
                   GGC  CCACCCC  GUAACAGCA CUCCAU UGGAA     \
                   UCG  GGUGGGG  UAUUGUCGU GGGGUG ACCUU     C
GAGGAGGAGACGUCCGUGG^  GA       UC         C      -     AGUCA 
      110       100        90        80        70         60

Deep sequencing

3' NTU

Yes

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Ad	Ad	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Dr	Dr	Du	Du	Du	Du	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Li	Li	Li	Li	Me	Me	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Mu	Ov	Pa	Pa	St	St	St	Te	Ut	Wh	Br	Fa	He	Ki	La	Li	Li	Lu	Mu	Pa	Sk	Sm	Sp	St	Te	Th

Mature sequence

Rno-Mir-194-P4_5p

mirBase accession

MIMAT0000869

Sequence

0- UGUAACAGCAACUCCAUGUGGAA -23

Get sequence

Proposed targets

microrna.org: MIMAT0000869
TargetScanVert: rno-miR-194-5p
miRDB: MIMAT0000869

Star sequence

Rno-Mir-194-P4_3p*

mirBase accession

MIMAT0017148

Sequence

36- CCAGUGGGGCUGCUGUUAUCUG -58

Get sequence

Proposed targets

TargetScanVert: rno-miR-194-3p
miRDB: MIMAT0017148