MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-194-P4

Family name MIR-194 (all species)
Seed GUAACAG
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-194-2
Paralogues Rno-Mir-194-P2 
Orthologues Aca-Mir-194-P4  Ami-Mir-194-P4  Bta-Mir-194-P4  Cfa-Mir-194-P4  Cja-Mir-194-P4  Cpi-Mir-194-P4  Cpo-Mir-194-P4  Dno-Mir-194-P4  Dre-Mir-194-P4a  Dre-Mir-194-P4b  Eca-Mir-194-P4  Ete-Mir-194-P4  Gja-Mir-194-P4  Gmo-Mir-194-P4a  Gmo-Mir-194-P4b  Hsa-Mir-194-P4  Lch-Mir-194-P4  Loc-Mir-194-P4  Mal-Mir-194-P4a  Mal-Mir-194-P4b  Mml-Mir-194-P4  Mmr-Mir-194-P4  Mmu-Mir-194-P4  Mun-Mir-194-P4  Neu-Mir-194-P4  Oan-Mir-194-P4  Ocu-Mir-194-P4  Pab-Mir-194-P4  Pbv-Mir-194-P4  Sha-Mir-194-P4  Spt-Mir-194-P4  Sto-Mir-194-P4  Tni-Mir-194-P4a  Tni-Mir-194-P4b  Xla-Mir-194-P4c  Xla-Mir-194-P4d  Xtr-Mir-194-P4 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(rn6)		 chr1: 221634800-221634857 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-194-P4)		 Mir-194-P4 chr1: 221634800-221634857 [+] UCSC Ensembl
Mir-192-P4 chr1: 221634994-221635058 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUGCUCUGACCCCCAUGGCUCCCACCCCCUGUAACAGCAACUCCAUGUGGAAGUGCCCACUGAUUCCAGUGGGGCUGCUGUUAUCUGGGGUGGAGGCUGGUGCCUGCAGAGGAGGAG
Get precursor sequence
Structure
        10          20        30        40        50         
UGUGCUCUGACCCCCAU--|  UC       CU         A      G     GUGCC 
                   GGC  CCACCCC  GUAACAGCA CUCCAU UGGAA     \
                   UCG  GGUGGGG  UAUUGUCGU GGGGUG ACCUU     C
GAGGAGGAGACGUCCGUGG^  GA       UC         C      -     AGUCA 
      110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-194-P4_5p
mirBase accessionMIMAT0000869
Sequence 
0- UGUAACAGCAACUCCAUGUGGAA -23
Get sequence
Proposed targets microrna.org: MIMAT0000869
TargetScanVert: rno-miR-194-5p
miRDB: MIMAT0000869
Star sequence

Rno-Mir-194-P4_3p*
mirBase accessionMIMAT0017148
Sequence 
36- CCAGUGGGGCUGCUGUUAUCUG -58
Get sequence
Proposed targets TargetScanVert: rno-miR-194-3p
miRDB: MIMAT0017148