MirGeneDB 3.0
MirGeneDB ID

Cpi-Mir-194-P4

Family name MIR-194 (all species)
Seed GUAACAG
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-194-2
Paralogues Cpi-Mir-194-P2 
Orthologues Aca-Mir-194-P4  Ami-Mir-194-P4  Bta-Mir-194-P4  Cfa-Mir-194-P4  Cja-Mir-194-P4  Cpo-Mir-194-P4  Dno-Mir-194-P4  Dre-Mir-194-P4a  Dre-Mir-194-P4b  Eca-Mir-194-P4  Ete-Mir-194-P4  Gja-Mir-194-P4  Gmo-Mir-194-P4a  Gmo-Mir-194-P4b  Hsa-Mir-194-P4  Lch-Mir-194-P4  Loc-Mir-194-P4  Mal-Mir-194-P4a  Mal-Mir-194-P4b  Mml-Mir-194-P4  Mmr-Mir-194-P4  Mmu-Mir-194-P4  Mun-Mir-194-P4  Neu-Mir-194-P4  Oan-Mir-194-P4  Ocu-Mir-194-P4  Pab-Mir-194-P4  Pbv-Mir-194-P4  Rno-Mir-194-P4  Sha-Mir-194-P4  Spt-Mir-194-P4  Sto-Mir-194-P4  Tni-Mir-194-P4a  Tni-Mir-194-P4b  Xla-Mir-194-P4c  Xla-Mir-194-P4d  Xtr-Mir-194-P4 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(chrPic1)		 JH584847: 982519-982578 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-194-P4)		 Mir-194-P4 JH584847: 982519-982578 [+] UCSC Ensembl
Mir-192-P4 JH584847: 983412-983475 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCCCCCUGCUGGAAGGUGAUGCCUAUUGGAUGUAACAGCAACUCCAUGUGGAAGGUUUCAUCCCUUUUCCAGUGGGGCUGCUGUUAUUUUUGAUAGGCUGUCAGGAGCGUCGCAUGGAGC
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Structure
        10         20         30        40        50          
GCCCCCUGCUGGAAGGU-   -|     UG  U         A      G     GGUUUC 
                  GAU GCCUAU  GA GUAACAGCA CUCCAU UGGAA      \
                  CUG CGGAUA  UU UAUUGUCGU GGGGUG ACCUU      A
CGAGGUACGCUGCGAGGA   U^     GU  U         C      -     UUCCCU 
.       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Te Te Te To
Mature sequence

Cpi-Mir-194-P4_5p
mirBase accessionMIMAT0037812
Sequence 
0- UGUAACAGCAACUCCAUGUGGAA -23
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Star sequence

Cpi-Mir-194-P4_3p*
mirBase accessionMIMAT0037814
Sequence 
38- CCAGUGGGGCUGCUGUUAUUUU -60
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