Mir-194-P4

MirGeneDB ID

Sha-Mir-194-P4

Family name

MIR-194 (all species)

Seed

GUAACAG

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Orthologues

Aca-Mir-194-P4 Ami-Mir-194-P4 Bta-Mir-194-P4 Cfa-Mir-194-P4 Cja-Mir-194-P4 Cpi-Mir-194-P4 Cpo-Mir-194-P4 Dno-Mir-194-P4 Dre-Mir-194-P4a Dre-Mir-194-P4b Eca-Mir-194-P4 Ete-Mir-194-P4 Gja-Mir-194-P4 Gmo-Mir-194-P4a Gmo-Mir-194-P4b Hsa-Mir-194-P4 Lch-Mir-194-P4 Loc-Mir-194-P4 Mal-Mir-194-P4a Mal-Mir-194-P4b Mml-Mir-194-P4 Mmr-Mir-194-P4 Mmu-Mir-194-P4 Mun-Mir-194-P4 Neu-Mir-194-P4 Oan-Mir-194-P4 Ocu-Mir-194-P4 Pab-Mir-194-P4 Pbv-Mir-194-P4 Rno-Mir-194-P4 Spt-Mir-194-P4 Sto-Mir-194-P4 Tni-Mir-194-P4a Tni-Mir-194-P4b Xla-Mir-194-P4c Xla-Mir-194-P4d Xtr-Mir-194-P4

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(DEVIL_add)

AFEY01099922_Mir-192-P1_Mir-194-P1: 2424-2481 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGGAGGGGAGCCGCCGUGGCGCCCACCCCCUGUAACAGCAACUCCAUGUGGGACGGCUUCCUUCUUCCAGUGGGGGCGCUGUUACCUUGGGUGGGCAGCCCAGAUCCCGCAGAAAGAA

Get precursor sequence

Structure

        10         20         30        40        50         
AGGAGGGGAGCCGCCGU-   -|       CCU        AA      G    ACGGCU 
                  GGC GCCCACCC   GUAACAGC  CUCCAU UGGG      \
                  CCG CGGGUGGG   CAUUGUCG  GGGGUG ACCU      U
AAGAAAGACGCCCUAGAC   A^       UUC        CG      -    UCUUCC 
      110       100        90        80        70         60

Deep sequencing

Go to detailed chart

Comment

Not in assembly but in trace archive.

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-194-P4_5p

mirBase accession

None

Sequence

0- UGUAACAGCAACUCCAUGUGGGA -23

Get sequence

Star sequence

Sha-Mir-194-P4_3p*

mirBase accession

None

Sequence

36- CCAGUGGGGGCGCUGUUACCUU -58

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