MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-194-P4

Family name MIR-194 (all species)
Seed GUAACAG
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-194-2
Paralogues Xtr-Mir-194-P2 
Orthologues Aca-Mir-194-P4  Ami-Mir-194-P4  Bta-Mir-194-P4  Cfa-Mir-194-P4  Cja-Mir-194-P4  Cpi-Mir-194-P4  Cpo-Mir-194-P4  Dno-Mir-194-P4  Dre-Mir-194-P4a  Dre-Mir-194-P4b  Eca-Mir-194-P4  Ete-Mir-194-P4  Gja-Mir-194-P4  Gmo-Mir-194-P4a  Gmo-Mir-194-P4b  Hsa-Mir-194-P4  Lch-Mir-194-P4  Loc-Mir-194-P4  Mal-Mir-194-P4a  Mal-Mir-194-P4b  Mml-Mir-194-P4  Mmr-Mir-194-P4  Mmu-Mir-194-P4  Mun-Mir-194-P4  Neu-Mir-194-P4  Oan-Mir-194-P4  Ocu-Mir-194-P4  Pab-Mir-194-P4  Pbv-Mir-194-P4  Rno-Mir-194-P4  Sha-Mir-194-P4  Spt-Mir-194-P4  Sto-Mir-194-P4  Tni-Mir-194-P4a  Tni-Mir-194-P4b  Xla-Mir-194-P4c  Xla-Mir-194-P4d 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)		 chr4: 38492078-38492136 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-194-P4)		 Mir-194-P4 chr4: 38492078-38492136 [+] UCSC Ensembl
Mir-192-P4 chr4: 38493655-38493715 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AACCCCAUGGAGAUACUGAUGCUCAUAACCUGUAACAGCAACUCCAUGUGGAAGUAGAUAUAAUAUUCCGGUGGAGAUGCUGUUAUCUGUAAUGUGUAUCUAUAAUUCUUUAAGUGGAA
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Structure
        10          20        30        40        50         
AACCCCAUGGAGAUACU--|    U   A  CU         A      G     GUAGA 
                   GAUGC CAU AC  GUAACAGCA CUCCAU UGGAA     U
                   CUAUG GUA UG  UAUUGUCGU GAGGUG GCCUU     A
AAGGUGAAUUUCUUAAUAU^    U   A  UC         A      -     AUAAU 
       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-194-P4_5p
mirBase accessionMIMAT0003617
Sequence 
0- UGUAACAGCAACUCCAUGUGGAA -23
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Proposed targets TargetScanVert: xtr-miR-194
Star sequence

Xtr-Mir-194-P4_3p*
mirBase accessionNone
Sequence 
37- CCGGUGGAGAUGCUGUUAUCUG -59
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