MirGeneDB 3.0

MirGeneDB ID

Spt-Mir-194-P4

Family name MIR-194 (all species)
Seed GUAACAG
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues Spt-Mir-194-P2 
Orthologues Aca-Mir-194-P4  Ami-Mir-194-P4  Bta-Mir-194-P4  Cfa-Mir-194-P4  Cja-Mir-194-P4  Cpi-Mir-194-P4  Cpo-Mir-194-P4  Dno-Mir-194-P4  Dre-Mir-194-P4a  Dre-Mir-194-P4b  Eca-Mir-194-P4  Ete-Mir-194-P4  Gja-Mir-194-P4  Gmo-Mir-194-P4a  Gmo-Mir-194-P4b  Hsa-Mir-194-P4  Lch-Mir-194-P4  Loc-Mir-194-P4  Mal-Mir-194-P4a  Mal-Mir-194-P4b  Mml-Mir-194-P4  Mmr-Mir-194-P4  Mmu-Mir-194-P4  Mun-Mir-194-P4  Neu-Mir-194-P4  Oan-Mir-194-P4  Ocu-Mir-194-P4  Pab-Mir-194-P4  Pbv-Mir-194-P4  Rno-Mir-194-P4  Sha-Mir-194-P4  Sto-Mir-194-P4  Tni-Mir-194-P4a  Tni-Mir-194-P4b  Xla-Mir-194-P4c  Xla-Mir-194-P4d  Xtr-Mir-194-P4 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01015260.1: 384821-384880 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAUGUUUGCACAACUGGGGUGCUUAUCUGCUGUAACAGCAACUCCAUGUGGAAGUCUCUGGCCUGGUUCCAGUGGGGCGGCUGUUAUUUUGGAUGGGCACUCGGGAGCAUCAGAUGGGGC
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Structure
        10          20        30        40        50          
GAUGUUUGCACAACUGG--|           CU        AA      G     GUCUCU 
                   GGUGCUUAUCUG  GUAACAGC  CUCCAU UGGAA      \
                   UCACGGGUAGGU  UAUUGUCG  GGGGUG ACCUU      G
CGGGGUAGACUACGAGGGC^           UU        GC      -     GGUCCG 
.       110       100        90        80         70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Spt-Mir-194-P4_5p (predicted)

mirBase accessionNone
Sequence
0- UGUAACAGCAACUCCAUGUGGAA -23
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Star sequence

Spt-Mir-194-P4_3p* (predicted)

mirBase accessionNone
Sequence
38- CCAGUGGGGCGGCUGUUAUUUU -60
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