MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-194-P4

Family name MIR-194 (all species)
Seed GUAACAG
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-194
Paralogues
Orthologues Aca-Mir-194-P4  Ami-Mir-194-P4  Bta-Mir-194-P4  Cfa-Mir-194-P4  Cja-Mir-194-P4  Cpi-Mir-194-P4  Dno-Mir-194-P4  Dre-Mir-194-P4a  Dre-Mir-194-P4b  Eca-Mir-194-P4  Ete-Mir-194-P4  Gja-Mir-194-P4  Gmo-Mir-194-P4a  Gmo-Mir-194-P4b  Hsa-Mir-194-P4  Lch-Mir-194-P4  Loc-Mir-194-P4  Mal-Mir-194-P4a  Mal-Mir-194-P4b  Mml-Mir-194-P4  Mmr-Mir-194-P4  Mmu-Mir-194-P4  Mun-Mir-194-P4  Neu-Mir-194-P4  Oan-Mir-194-P4  Ocu-Mir-194-P4  Pab-Mir-194-P4  Pbv-Mir-194-P4  Rno-Mir-194-P4  Sha-Mir-194-P4  Spt-Mir-194-P4  Sto-Mir-194-P4  Tni-Mir-194-P4a  Tni-Mir-194-P4b  Xla-Mir-194-P4c  Xla-Mir-194-P4d  Xtr-Mir-194-P4 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)		 scaffold_42: 5717423-5717480 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-194-P4)		 Mir-192-P4 scaffold_42: 5717225-5717289 [-] UCSC
Mir-194-P4 scaffold_42: 5717423-5717480 [-] UCSC
Precursor
(pre-Mir +30nt flank)
AGGGCCCAACCUUGAGGGGCUCCCUCCCCCUGUAACAGCAACUCCAUGUGGAAGUGCCCACUGGUUCCAGUGGGGCUGCUGUUAUCUGGGGCGGGGGCCCGGAUCCACAGCCAAGGAG
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Structure
        10          20        30        40        50         
AGGGCCCAACCUUGAGG--|      U    CU         A      G     GUGCC 
                   GGCUCCC CCCC  GUAACAGCA CUCCAU UGGAA     \
                   CCGGGGG GGGG  UAUUGUCGU GGGGUG ACCUU     C
GAGGAACCGACACCUAGGC^      C    UC         C      -     GGUCA 
      110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Mature sequence

Cpo-Mir-194-P4_5p
mirBase accessionMIMAT0047074
Sequence 
0- UGUAACAGCAACUCCAUGUGGAA -23
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Star sequence

Cpo-Mir-194-P4_3p*
mirBase accessionMIMAT0047075
Sequence 
36- CCAGUGGGGCUGCUGUUAUCUG -58
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