Mir-192-P4

MirGeneDB ID

Cpo-Mir-192-P4

Family name

MIR-192 (all species)

Seed

UGACCUA

Species

Guinea pig (Cavia porcellus)

MiRBase ID

cpo-mir-192

Paralogues

Cpo-Mir-192-P2

Orthologues

Ami-Mir-192-P4 Bta-Mir-192-P4 Cfa-Mir-192-P4 Cja-Mir-192-P4 Cpi-Mir-192-P4 Dno-Mir-192-P4 Dre-Mir-192-P4b Eca-Mir-192-P4 Ete-Mir-192-P4 Gja-Mir-192-P4 Gmo-Mir-192-P4b Hsa-Mir-192-P4 Loc-Mir-192-P4 Mal-Mir-192-P4b Mml-Mir-192-P4 Mmr-Mir-192-P4 Mmu-Mir-192-P4 Mun-Mir-192-P4 Neu-Mir-192-P4 Oan-Mir-192-P4 Ocu-Mir-192-P4 Pab-Mir-192-P4 Rno-Mir-192-P4 Sha-Mir-192-P4 Spt-Mir-192-P4 Tni-Mir-192-P4b-v1 Tni-Mir-192-P4b-v2 Xla-Mir-192-P4c Xla-Mir-192-P4d Xtr-Mir-192-P4

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(cavPor3)

scaffold_42: 5717225-5717289 [-] UCSC

Clustered miRNAs
(< 50kb from Mir-192-P4)

Mir-192-P4 scaffold_42: 5717225-5717289 [-] UCSC
Mir-194-P4 scaffold_42: 5717423-5717480 [-] UCSC

Precursor
(pre-Mir +30nt flank)

UGGGCUGCCCAAGACCGAGUGCACAGGGCUCUGACCUAUGAAUUGACAGCCAGUGCUGUCAGCUCCCCUCUGGCUGCCAAUUCCAUAGGUCACAGGUAUGUUCGCCUCAAUGCCUGCCGCCGCUG

Get precursor sequence

Structure

        10          20        30          40        50        60 
UGGGCUGCCCAAGACCGA--   C   GG   C-        -|     A     AGUGCUGUC 
                    GUG ACA  GCU  UGACCUAU GAAUUG CAGCC         A
                    CGC UGU  UGG  ACUGGAUA CUUAAC GUCGG         G
GUCGCCGCCGUCCGUAACUC   U   A-   AC        C^     C     UCUCCCCUC 
   120       110       100         90        80        70