MirGeneDB 3.0

MirGeneDB ID

Spt-Mir-192-P4

Family name MIR-192 (all species)
Seed UGACCUA
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues Spt-Mir-192-P2 
Orthologues Ami-Mir-192-P4  Bta-Mir-192-P4  Cfa-Mir-192-P4  Cja-Mir-192-P4  Cpi-Mir-192-P4  Cpo-Mir-192-P4  Dno-Mir-192-P4  Dre-Mir-192-P4b  Eca-Mir-192-P4  Ete-Mir-192-P4  Gja-Mir-192-P4  Gmo-Mir-192-P4b  Hsa-Mir-192-P4  Loc-Mir-192-P4  Mal-Mir-192-P4b  Mml-Mir-192-P4  Mmr-Mir-192-P4  Mmu-Mir-192-P4  Mun-Mir-192-P4  Neu-Mir-192-P4  Oan-Mir-192-P4  Ocu-Mir-192-P4  Pab-Mir-192-P4  Rno-Mir-192-P4  Sha-Mir-192-P4  Tni-Mir-192-P4b-v1  Tni-Mir-192-P4b-v2  Xla-Mir-192-P4c  Xla-Mir-192-P4d  Xtr-Mir-192-P4 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01015260.1: 385969-386032 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGCCGCUCCGAGGACUGAGUGCACAGGGCUAUGACCUAUGAACUGACAGCCAGUCCUCCGGCCGUGCCUUGGCUGUCAGUUCUAUAGGGCACAGGUAUGUUCGCCUCCAUGACGACCGACGGAC
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Structure
        10          20        30          40        50        60 
AGCCGCUCCGAGGACUGA--   C   GG   A-  A     -|           AGUCCUCCG 
                    GUG ACA  GCU  UG CCUAU GAACUGACAGCC         \
                    CGC UGU  UGG  AC GGAUA CUUGACUGUCGG         G
CAGGCAGCCAGCAGUACCUC   U   A-   AC  G     U^           UUCCGUGCC 
  120       110       100         90        80        70
Deep sequencing
3' NTU Unknown
MotifsNo
Mature sequence

Spt-Mir-192-P4_5p (predicted)

mirBase accessionNone
Sequence
0- AUGACCUAUGAACUGACAGCC -21
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Star sequence

Spt-Mir-192-P4_3p* (predicted)

mirBase accessionNone
Sequence
42- CUGUCAGUUCUAUAGGGCACAG -64
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