Mir-192-P4d

MirGeneDB ID

Xla-Mir-192-P4d

Family name

MIR-192 (all species)

Seed

UGACCUA

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-192-P2a Xla-Mir-192-P2b Xla-Mir-192-P4c

Orthologues

Ami-Mir-192-P4 Bta-Mir-192-P4 Cfa-Mir-192-P4 Cja-Mir-192-P4 Cpi-Mir-192-P4 Cpo-Mir-192-P4 Dno-Mir-192-P4 Eca-Mir-192-P4 Ete-Mir-192-P4 Gja-Mir-192-P4 Hsa-Mir-192-P4 Loc-Mir-192-P4 Mml-Mir-192-P4 Mmr-Mir-192-P4 Mmu-Mir-192-P4 Mun-Mir-192-P4 Neu-Mir-192-P4 Oan-Mir-192-P4 Ocu-Mir-192-P4 Pab-Mir-192-P4 Rno-Mir-192-P4 Sha-Mir-192-P4 Spt-Mir-192-P4 Xtr-Mir-192-P4

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030731.1: 2843983-2844043 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAAACAGAGAGGAAGCGAGUGUACGGGCCUAUGACCUAUGAAUUGACAGCUAGUGGAUGUACAGUCUGACUGUCAGUUCUGUAGGGCACAGGUUCGUCCACCUUAUUGCUAUACACAUAAA

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Structure

        10          20        30         40        50         
AAAACAGAGAGGAAGCGA--   U        A  A     -|         C  GUGGAU 
                    GUG ACGGGCCU UG CCUAU GAAUUGACAG UA      G
                    CAC UGCUUGGA AC GGAUG CUUGACUGUC GU      U
AAAUACACAUAUCGUUAUUC   C        C  G     U^         A  CUGACA 
 .       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

UGUG in loop

Tissue expression

Em

Mature sequence

Xla-Mir-192-P4d_5p

mirBase accession

None

Sequence

0- AUGACCUAUGAAUUGACAGCUA -22

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Star sequence

Xla-Mir-192-P4d_3p*

mirBase accession

None

Sequence

38- ACUGUCAGUUCUGUAGGGCACAG -61

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