MirGeneDB ID | Gja-Mir-192-P4 |
Family name |
MIR-192 (all species) |
Seed |
UGACCUA |
Species |
Schlegels Japanese gecko (Gekko japonicus) |
MiRBase ID |
|
Paralogues |
Gja-Mir-192-P2
|
Orthologues |
Ami-Mir-192-P4
Bta-Mir-192-P4
Cfa-Mir-192-P4
Cja-Mir-192-P4
Cpi-Mir-192-P4
Cpo-Mir-192-P4
Dno-Mir-192-P4
Dre-Mir-192-P4b
Eca-Mir-192-P4
Ete-Mir-192-P4
Gmo-Mir-192-P4b
Hsa-Mir-192-P4
Loc-Mir-192-P4
Mal-Mir-192-P4b
Mml-Mir-192-P4
Mmr-Mir-192-P4
Mmu-Mir-192-P4
Mun-Mir-192-P4
Neu-Mir-192-P4
Oan-Mir-192-P4
Ocu-Mir-192-P4
Pab-Mir-192-P4
Rno-Mir-192-P4
Sha-Mir-192-P4
Spt-Mir-192-P4
Tni-Mir-192-P4b-v1
Tni-Mir-192-P4b-v2
Xla-Mir-192-P4c
Xla-Mir-192-P4d
Xtr-Mir-192-P4
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCF_001447785.1_Gekko_japonicus) |
NW_015165831.1: 1121834-1121897 [-]
|
Precursor (pre-Mir +30nt flank) |
CCUUCGGCUUCGGAUCGAGGGCACACAGCUAUGACCUAUGAAUUGACAGCCAGUCCUCCUACUCCUUCCUGGCUGUCAGUUCUGUAGGGCACAAGUUUGUCCCCCUCCAUGGCCACCACCCACG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CCUUCGGCUUCGGAUCGA-- C C A- A -| AGUCCUCCU
GGG ACA AGCU UG CCUAU GAAUUGACAGCC \
CCC UGU UUGA AC GGAUG CUUGACUGUCGG A
GCACCCACCACCGGUACCUC C - AC G U^ UCCUUCCUC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There are Dicer cuts +1 and +2 on both arms, and a Dicer cut +3 on the 3p arm. |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Gja-Mir-192-P4_5p |
mirBase accession | None |
Sequence |
0- AUGACCUAUGAAUUGACAGCC -21
Get sequence
|
Star sequence |
Gja-Mir-192-P4_3p* |
mirBase accession | None |
Sequence |
42- CUGUCAGUUCUGUAGGGCACAA -64
Get sequence
|