MirGeneDB 3.0

MirGeneDB ID

Gmo-Mir-192-P4b

Family name MIR-192 (all species)
Seed UGACCUA
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-192
Paralogues
Orthologues Ami-Mir-192-P4  Bta-Mir-192-P4  Cfa-Mir-192-P4  Cja-Mir-192-P4  Cpi-Mir-192-P4  Cpo-Mir-192-P4  Dno-Mir-192-P4  Dre-Mir-192-P4b  Eca-Mir-192-P4  Ete-Mir-192-P4  Gja-Mir-192-P4  Hsa-Mir-192-P4  Loc-Mir-192-P4  Mal-Mir-192-P4b  Mml-Mir-192-P4  Mmr-Mir-192-P4  Mmu-Mir-192-P4  Mun-Mir-192-P4  Neu-Mir-192-P4  Oan-Mir-192-P4  Ocu-Mir-192-P4  Pab-Mir-192-P4  Rno-Mir-192-P4  Sha-Mir-192-P4  Spt-Mir-192-P4  Tni-Mir-192-P4b-v1  Tni-Mir-192-P4b-v2  Xtr-Mir-192-P4 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_4270: 35460-35519 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-192-P4b)
Mir-192-P4b GeneScaffold_4270: 35460-35519 [-] UCSC Ensembl
Mir-194-P4b GeneScaffold_4270: 35898-35952 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUGAGUGACAGCUUGUCGGGGCGCAGGGUGAUGACCUAUGAAUUGACAGCCAGUCGUCCUCAAGUUGCCUGUCAGUUUUAUAGGCCACUGCUGUGUAGGACCCCACUAACGACCGGUCGC
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Structure
        10         20         30         40        50         
UUGAGUGACAGCUUGUC-  GGC-   G   GA  A     -|         C  GUCGUC 
                  GG    GCA GGU  UG CCUAU GAAUUGACAG CA      \
                  CC    UGU UCG  AC GGAUA UUUGACUGUC GU      C
CGCUGGCCAGCAAUCACC  AGGA   G   UC  C     U^         C  UGAACU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-192-P4b_5p

mirBase accessionMIMAT0044277
Sequence
0- AUGACCUAUGAAUUGACAGCCA -22
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Star sequence

Gmo-Mir-192-P4b_3p*

mirBase accessionNone
Sequence
37- CCUGUCAGUUUUAUAGGCCACUG -60
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