MirGeneDB 3.0

MirGeneDB ID

Dre-Mir-192-P4b

Family name MIR-192 (all species)
Seed UGACCUA
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-192
Paralogues
Orthologues Ami-Mir-192-P4  Bta-Mir-192-P4  Cfa-Mir-192-P4  Cja-Mir-192-P4  Cpi-Mir-192-P4  Cpo-Mir-192-P4  Dno-Mir-192-P4  Eca-Mir-192-P4  Ete-Mir-192-P4  Gja-Mir-192-P4  Gmo-Mir-192-P4b  Hsa-Mir-192-P4  Loc-Mir-192-P4  Mal-Mir-192-P4b  Mml-Mir-192-P4  Mmr-Mir-192-P4  Mmu-Mir-192-P4  Mun-Mir-192-P4  Neu-Mir-192-P4  Oan-Mir-192-P4  Ocu-Mir-192-P4  Pab-Mir-192-P4  Rno-Mir-192-P4  Sha-Mir-192-P4  Spt-Mir-192-P4  Tni-Mir-192-P4b-v1  Tni-Mir-192-P4b-v2  Xtr-Mir-192-P4 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)
chr10: 27063369-27063431 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-192-P4b)
Mir-194-P4b chr10: 27063188-27063244 [+] UCSC Ensembl
Mir-192-P4b chr10: 27063369-27063431 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGAGCAUGGUUAAGUCUAGGACACAGGGUGAUGACCUAUGAAUUGACAGCCAGUGUUUGCAGUCCAGCUGCCUGUCAGUUCUGUAGGCCACUGCCCUGUUUAUCCUACUAAACACACACUGAU
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Structure
        10        20          30         40        50        60
AGAGCAUGGUUAAGUCUA   C--       GA  A     -|         C  GUGUUUG 
                  GGA   ACAGGGU  UG CCUAU GAAUUGACAG CA       C
                  CCU   UGUCCCG  AC GGAUG CUUGACUGUC GU       A
UAGUCACACACAAAUCAU   AUU       UC  C     U^         C  CGACCUG 
 120       110       100        90        80        70
Deep sequencing
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3' NTU Yes
MotifsUGUG in loop
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-192-P4b_5p

mirBase accessionMIMAT0001275
Sequence
0- AUGACCUAUGAAUUGACAGCCA -22
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Proposed targets TargetScanFish: dre-miR-192
Star sequence

Dre-Mir-192-P4b_3p*

mirBase accessionNone
Sequence
40- CCUGUCAGUUCUGUAGGCCACUG -63
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