MirGeneDB ID | Cja-Mir-192-P4 |
---|---|
Family name | MIR-192 (all species) |
Seed | UGACCUA |
Species | White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID | |
Paralogues | Cja-Mir-192-P2 |
Orthologues | Ami-Mir-192-P4 Bta-Mir-192-P4 Cfa-Mir-192-P4 Cpi-Mir-192-P4 Cpo-Mir-192-P4 Dno-Mir-192-P4 Dre-Mir-192-P4b Eca-Mir-192-P4 Ete-Mir-192-P4 Gja-Mir-192-P4 Gmo-Mir-192-P4b Hsa-Mir-192-P4 Loc-Mir-192-P4 Mal-Mir-192-P4b Mml-Mir-192-P4 Mmr-Mir-192-P4 Mmu-Mir-192-P4 Mun-Mir-192-P4 Neu-Mir-192-P4 Oan-Mir-192-P4 Ocu-Mir-192-P4 Pab-Mir-192-P4 Rno-Mir-192-P4 Sha-Mir-192-P4 Spt-Mir-192-P4 Tni-Mir-192-P4b-v1 Tni-Mir-192-P4b-v2 Xla-Mir-192-P4c Xla-Mir-192-P4d Xtr-Mir-192-P4 |
Node of Origin (locus) | Vertebrata |
Node of Origin (family) | Vertebrata |
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021925.1: 118727318-118727382 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | GCGGGCUGCCGAGACCGAGUGCACAAGGCUCUGACCUAUGAGUUGACAGCCAGUGCUCUGGUCUCCCCUCUGGCUGCCAAUUCCAUAGGUCACAGGUAUGUUCGCCUCAAUGCCAGCCACCAGGAGet precursor sequence |
Structure | 10 20 30 40 50 60 GCGGGCUGCCGAGACCGA-- C AG C- -| A AGUGCUCUG GUG ACA GCU UGACCUAU GAGUUG CAGCC G CGC UGU UGG ACUGGAUA CUUAAC GUCGG U AGGACCACCGACCGUAACUC U A- AC C^ C UCUCCCCUC 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | No |
Mature sequence | Cja-Mir-192-P4_5p |
mirBase accession | None |
Sequence |
0- CUGACCUAUGAGUUGACAGCC -21
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|
Star sequence | Cja-Mir-192-P4_3p* |
mirBase accession | None |
Sequence |
43- CUGCCAAUUCCAUAGGUCACAG -65
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