MirGeneDB ID | Loc-Mir-192-P4 |
Family name |
MIR-192 (all species) |
Seed |
UGACCUA |
Species |
Spotted gar (Lepisosteus oculatus) |
MiRBase ID |
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Paralogues |
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Orthologues |
Ami-Mir-192-P4
Bta-Mir-192-P4
Cfa-Mir-192-P4
Cja-Mir-192-P4
Cpi-Mir-192-P4
Cpo-Mir-192-P4
Dno-Mir-192-P4
Dre-Mir-192-P4b
Eca-Mir-192-P4
Ete-Mir-192-P4
Gja-Mir-192-P4
Gmo-Mir-192-P4b
Hsa-Mir-192-P4
Mal-Mir-192-P4b
Mml-Mir-192-P4
Mmr-Mir-192-P4
Mmu-Mir-192-P4
Mun-Mir-192-P4
Neu-Mir-192-P4
Oan-Mir-192-P4
Ocu-Mir-192-P4
Pab-Mir-192-P4
Rno-Mir-192-P4
Sha-Mir-192-P4
Spt-Mir-192-P4
Tni-Mir-192-P4b-v1
Tni-Mir-192-P4b-v2
Xla-Mir-192-P4c
Xla-Mir-192-P4d
Xtr-Mir-192-P4
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
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Genome context (LepOcu1) |
LG28: 158411-158472 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
ACGAGCCCGCAGGGCCAGGGGCGCAGGACGAUGACCUAUGAAUUGACAGCCAGUGUUGUAUGGCGCCUGCCUGUCAGUUCUAUAGGCCACAGGCCUGCGGCCUCACUCCUGGACGCUCGGAC
Get precursor sequence
|
Structure | 10 20 30 40 50
ACGAGCCCGCAGGGCCA- - ACGA A -| C GUGUUGU
GGGG CGCAGG UG CCUAU GAAUUGACAG CA \
CUCC GCGUCC AC GGAUA CUUGACUGUC GU A
CAGGCUCGCAGGUCCUCA G GGAC C U^ C CCGCGGU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -1 on both arms. |
3' NTU |
Yes
|
Motifs | UGUG in loop |
Tissue expression
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Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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Mature sequence |
Loc-Mir-192-P4_5p |
mirBase accession | None |
Sequence |
0- AUGACCUAUGAAUUGACAGCCA -22
Get sequence
|
Star sequence |
Loc-Mir-192-P4_3p* |
mirBase accession | None |
Sequence |
39- CCUGUCAGUUCUAUAGGCCACAG -62
Get sequence
|