MirGeneDB ID | Pab-Mir-194-P4 |
---|---|
Family name | MIR-194 (all species) |
Seed | GUAACAG |
Species | Sumatran orangutan (Pongo abelii) |
MiRBase ID | |
Paralogues | Pab-Mir-194-P2 |
Orthologues | Aca-Mir-194-P4 Ami-Mir-194-P4 Bta-Mir-194-P4 Cfa-Mir-194-P4 Cja-Mir-194-P4 Cpi-Mir-194-P4 Cpo-Mir-194-P4 Dno-Mir-194-P4 Dre-Mir-194-P4a Dre-Mir-194-P4b Eca-Mir-194-P4 Ete-Mir-194-P4 Gja-Mir-194-P4 Gmo-Mir-194-P4a Gmo-Mir-194-P4b Hsa-Mir-194-P4 Lch-Mir-194-P4 Loc-Mir-194-P4 Mal-Mir-194-P4a Mal-Mir-194-P4b Mml-Mir-194-P4 Mmr-Mir-194-P4 Mmu-Mir-194-P4 Mun-Mir-194-P4 Neu-Mir-194-P4 Oan-Mir-194-P4 Ocu-Mir-194-P4 Pbv-Mir-194-P4 Rno-Mir-194-P4 Sha-Mir-194-P4 Spt-Mir-194-P4 Sto-Mir-194-P4 Tni-Mir-194-P4a Tni-Mir-194-P4b Xla-Mir-194-P4c Xla-Mir-194-P4d Xtr-Mir-194-P4 |
Node of Origin (locus) | Vertebrata |
Node of Origin (family) | Vertebrata |
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054688.2: 9804717-9804774 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | GGCCCCGGGCUCCAAUUGGCUCCCGCCCCCUGUAACAGCAACUCCAUGUGGAAGUGCCCACUGGUUCCAGUGGGGCUGCUGUUAUCUGGGGCGAGGGCCGGUACCCACGAAGAAGGAGGet precursor sequence |
Structure | 10 20 30 40 50 GGCCCCGGGCUCCAAUU--| C CU A G GUGCC GGCUC CGCCCC GUAACAGCA CUCCAU UGGAA \ CCGGG GCGGGG UAUUGUCGU GGGGUG ACCUU C GAGGAAGAAGCACCCAUGG^ A UC C - GGUCA 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Mature sequence | Pab-Mir-194-P4_5p |
mirBase accession | None |
Sequence |
0- UGUAACAGCAACUCCAUGUGGAA -23
Get sequence
|
Star sequence | Pab-Mir-194-P4_3p* (predicted) |
mirBase accession | None |
Sequence |
36- CCAGUGGGGCUGCUGUUAUCUG -58
Get sequence
|