Mir-194-P4

MirGeneDB ID

Cfa-Mir-194-P4

Family name

MIR-194 (all species)

Seed

GUAACAG

Species

Dog (Canis familiaris)

MiRBase ID

Paralogues

Cfa-Mir-194-P2

Orthologues

Aca-Mir-194-P4 Ami-Mir-194-P4 Bta-Mir-194-P4 Cja-Mir-194-P4 Cpi-Mir-194-P4 Cpo-Mir-194-P4 Dno-Mir-194-P4 Dre-Mir-194-P4a Dre-Mir-194-P4b Eca-Mir-194-P4 Ete-Mir-194-P4 Gja-Mir-194-P4 Gmo-Mir-194-P4a Gmo-Mir-194-P4b Hsa-Mir-194-P4 Lch-Mir-194-P4 Loc-Mir-194-P4 Mal-Mir-194-P4a Mal-Mir-194-P4b Mml-Mir-194-P4 Mmr-Mir-194-P4 Mmu-Mir-194-P4 Mun-Mir-194-P4 Neu-Mir-194-P4 Oan-Mir-194-P4 Ocu-Mir-194-P4 Pab-Mir-194-P4 Pbv-Mir-194-P4 Rno-Mir-194-P4 Sha-Mir-194-P4 Spt-Mir-194-P4 Sto-Mir-194-P4 Tni-Mir-194-P4a Tni-Mir-194-P4b Xla-Mir-194-P4c Xla-Mir-194-P4d Xtr-Mir-194-P4

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(canFam3_add)

chr18: 52280929-52280986 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGGCCAGGCCUCCAGUUGGUUCCUACCCCCUGUAACAGCAACUCCAUGUGGAAGUGCCCACUGGUUCCAGUGGGGCUGCUGUUAUCGGGGAUGGGGACCUGUACCCACGGAGGAGGAG

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Structure

        10          20        30        40        50         
GGGCCAGGCCUCCAGUU--|       C    U         A      G     GUGCC 
                   GGUUCCUA CCCC GUAACAGCA CUCCAU UGGAA     \
                   CCAGGGGU GGGG UAUUGUCGU GGGGUG ACCUU     C
GAGGAGGAGGCACCCAUGU^       A    C         C      -     GGUCA 
      110       100        90        80        70         60

Deep sequencing

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Bl	Ce	Co	He	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Mir-194-P4_5p

mirBase accession

None

Sequence

0- UGUAACAGCAACUCCAUGUGGAA -23

Get sequence

Star sequence

Cfa-Mir-194-P4_3p*

mirBase accession

None

Sequence

36- CCAGUGGGGCUGCUGUUAUCGG -58

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