MirGeneDB ID | Cfa-Mir-194-P4 |
Family name |
MIR-194 (all species) |
Seed |
GUAACAG |
Species |
Dog (Canis familiaris) |
MiRBase ID |
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Paralogues |
Cfa-Mir-194-P2
|
Orthologues |
Aca-Mir-194-P4
Ami-Mir-194-P4
Bta-Mir-194-P4
Cja-Mir-194-P4
Cpi-Mir-194-P4
Cpo-Mir-194-P4
Dno-Mir-194-P4
Dre-Mir-194-P4a
Dre-Mir-194-P4b
Eca-Mir-194-P4
Ete-Mir-194-P4
Gja-Mir-194-P4
Gmo-Mir-194-P4a
Gmo-Mir-194-P4b
Hsa-Mir-194-P4
Lch-Mir-194-P4
Loc-Mir-194-P4
Mal-Mir-194-P4a
Mal-Mir-194-P4b
Mml-Mir-194-P4
Mmr-Mir-194-P4
Mmu-Mir-194-P4
Mun-Mir-194-P4
Neu-Mir-194-P4
Oan-Mir-194-P4
Ocu-Mir-194-P4
Pab-Mir-194-P4
Pbv-Mir-194-P4
Rno-Mir-194-P4
Sha-Mir-194-P4
Spt-Mir-194-P4
Sto-Mir-194-P4
Tni-Mir-194-P4a
Tni-Mir-194-P4b
Xla-Mir-194-P4c
Xla-Mir-194-P4d
Xtr-Mir-194-P4
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (canFam3_add) |
chr18: 52280929-52280986 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGGCCAGGCCUCCAGUUGGUUCCUACCCCCUGUAACAGCAACUCCAUGUGGAAGUGCCCACUGGUUCCAGUGGGGCUGCUGUUAUCGGGGAUGGGGACCUGUACCCACGGAGGAGGAG
Get precursor sequence
|
Structure | 10 20 30 40 50
GGGCCAGGCCUCCAGUU--| C U A G GUGCC
GGUUCCUA CCCC GUAACAGCA CUCCAU UGGAA \
CCAGGGGU GGGG UAUUGUCGU GGGGUG ACCUU C
GAGGAGGAGGCACCCAUGU^ A C C - GGUCA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
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An |
An |
An |
Bl |
Ce |
Co |
He |
Hi |
Hi |
Hy |
Ki |
Ki |
Li |
Lu |
Ov |
Sk |
Te |
Te |
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Mature sequence |
Cfa-Mir-194-P4_5p |
mirBase accession | None |
Sequence |
0- UGUAACAGCAACUCCAUGUGGAA -23
Get sequence
|
Star sequence |
Cfa-Mir-194-P4_3p* |
mirBase accession | None |
Sequence |
36- CCAGUGGGGCUGCUGUUAUCGG -58
Get sequence
|