MirGeneDB 2.1

MirGeneDB ID

Hsa-Mir-194-P2

Family name MIR-194 (all species)
Seed GUAACAG
Species Human (Homo sapiens)
MiRBase ID hsa-mir-194-2
Paralogues Hsa-Mir-194-P1 
Orthologues Aca-Mir-194-P2  Ami-Mir-194-P2  Bta-Mir-194-P2  Cfa-Mir-194-P2  Cpi-Mir-194-P2  Cpo-Mir-194-P2  Dno-Mir-194-P2  Dre-Mir-194-P2a  Dre-Mir-194-P2b  Ete-Mir-194-P2  Gja-Mir-194-P2  Gmo-Mir-194-P2a  Gmo-Mir-194-P2b  Lch-Mir-194-P2  Loc-Mir-194-P2  Mal-Mir-194-P2a  Mal-Mir-194-P2b  Mml-Mir-194-P2  Mmu-Mir-194-P2  Mun-Mir-194-P2  Oan-Mir-194-P2  Ocu-Mir-194-P2  Pbv-Mir-194-P2  Rno-Mir-194-P2  Sha-Mir-194-P2  Spt-Mir-194-P2  Sto-Mir-194-P2  Tni-Mir-194-P2a  Tni-Mir-194-P2b  Xla-Mir-194-P2c  Xla-Mir-194-P2d  Xtr-Mir-194-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(hg38)
chr11: 64891368-64891425 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-194-P2)
Mir-192-P2 chr11: 64891159-64891223 [-] UCSC Ensembl
Mir-194-P2 chr11: 64891368-64891425 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGCCCCGGUCUCCAAUUGGUUCCCGCCCCCUGUAACAGCAACUCCAUGUGGAAGUGCCCACUGGUUCCAGUGGGGCUGCUGUUAUCUGGGGCGAGGGCCAGUACCCACGAAGAAGGAG
Get precursor sequence
Structure
        10          20        30        40        50         
GGCCCCGGUCUCCAAUU--|    C      CU         A      G     GUGCC 
                   GGUUC CGCCCC  GUAACAGCA CUCCAU UGGAA     \
                   CCGGG GCGGGG  UAUUGUCGU GGGGUG ACCUU     C
GAGGAAGAAGCACCCAUGA^    A      UC         C      -     GGUCA 
      110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
1- 1- 1- 1- 1- 1- 1- 1- 1- 1- 1- 1- 1- 2- 2- 2- 2- 2- 2- 2- 2- 2- 2- 2- 3- 3- 3- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 5- 5- 5- 5- 5- 5- 5- 6- 6- 6- 6- 6-
Mature sequence

Hsa-Mir-194-P2_5p

mirBase accessionMIMAT0000460
Sequence
0- UGUAACAGCAACUCCAUGUGGAA -23
Get sequence
Proposed targets microrna.org: MIMAT0000460
TargetScanVert: hsa-miR-194-5p
TargetMiner: hsa-miR-194-5p
miRDB: MIMAT0000460
Star sequence

Hsa-Mir-194-P2_3p*

mirBase accessionMIMAT0004671
Sequence
36- CCAGUGGGGCUGCUGUUAUCUG -58
Get sequence
Proposed targets microrna.org: MIMAT0004671
TargetScanVert: hsa-miR-194-3p
TargetMiner: hsa-miR-194-3p
miRDB: MIMAT0004671