| MirGeneDB ID | Efe-Mir-1987 |
|---|
| Family name |
MIR-1987 (all species) |
|---|
| Seed |
CUGCCAG |
|---|
| Species |
Common brandling worm (Eisenia fetida) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Cte-Mir-1987
Pdu-Mir-1987
|
|---|
| Node of Origin (locus) |
Pleistoannelida
|
|---|
| Node of Origin (family) |
Pleistoannelida
|
|---|
Genome context
(Efe_combined) |
Efet.01.207197: 888-947 [-]
|
|---|
Precursor
(pre-Mir +30nt flank) |
AGAAAGCUCCUUGAUCGGAUUAGCUAUCGCAGAGCCUUAUGUACGGGCAUACUGUAAUCAAUCAAACCACUGCCAGACGUAAGGUUUUGCGUUUAGCCUAUCACGGAACAGCAGCUGCGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGAAAGCUCCUUGAUCG- UA U-| ACG UACUGUAAUC
GAU GCUA CGCAGAGCCUUAUGU GGCA \
CUA CGAU GCGUUUUGGAAUGCA CCGU A
UGCGUCGACGACAAGGCA UC UU^ GA- CACCAAACUA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
|
|---|
| Comment | A star has not yet been recorded from this miRNA but it is deeply conserved across annelids. |
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Efe-Mir-1987_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- AGAGCCUUAUGUACGGGCAUACU -23
Get sequence
|
|---|
| Mature sequence |
Efe-Mir-1987_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
38- ACUGCCAGACGUAAGGUUUUGC -60
Get sequence
|
|---|
