| MirGeneDB ID | Pdu-Mir-1987 |
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| Family name |
MIR-1987 (all species) |
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| Seed |
AUAACUG |
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| Species |
Dumerils clam worm (Platynereis dumerilii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Cte-Mir-1987
Efe-Mir-1987
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| Node of Origin (locus) |
Pleistoannelida
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| Node of Origin (family) |
Pleistoannelida
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Genome context
(GCA_026936325.1_EMBL_pdum_1.0) |
JAPTHN010000001.1: 66332419-66332476 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
ACUGUGUUCAACUAAUUGUCUAGGACAGACCAUAACUGGCACCUGGGCAUGUUGCUCUUCACUCAACUGCCAGAUGUCAUGUUGUGCACUGCUCUGCGACUUCAACCUCAAUCAGAAA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
ACUGUGUUCAACUAAUU- - GA AC -| C G U CUCU
GUC UAG CAG CAUAAC UGGCA CUGG CA GUUG \
CAG GUC GUC GUGUUG ACUGU GACC GU CAAC U
AAAGACUAACUCCAACUU C UC AC U^ A - - UCAC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| 24 |
24 |
24 |
24 |
24 |
36 |
36 |
36 |
36 |
36 |
48 |
48 |
48 |
48 |
48 |
6d |
6d |
6d |
6d |
72 |
72 |
72 |
72 |
72 |
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| Mature sequence |
Pdu-Mir-1987_5p |
| mirBase accession | None |
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| Sequence |
0- CAUAACUGGCACCUGGGCAUGUUG -24
Get sequence
|
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| Co-mature sequence |
Pdu-Mir-1987_3p |
| mirBase accession | None |
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| Sequence |
35- ACUGCCAGAUGUCAUGUUGUGCA -58
Get sequence
|
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