| MirGeneDB ID | Efe-Mir-2687 |
|---|
| Family name |
MIR-2687 (all species) |
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| Seed |
AGGUAGU |
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| Species |
Common brandling worm (Eisenia fetida) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Cte-Mir-2687
|
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| Node of Origin (locus) |
Sedentaria
|
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| Node of Origin (family) |
Sedentaria
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Genome context
(Efe_combined) |
Efet.01.83002: 1888-1951 [+]
|
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Precursor
(pre-Mir +30nt flank) |
NNNNNNNNNNNNNNNAGUUAUGCUAGCUUCUAGGUAGUCGCUCUUGGGUAACUCGGUGUCAAAGGCUGUCAGCGACUCAGUGUGACUGCCUGGAAGGAGCAUAGCCCCAAUCAACGACAACAAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
NNNNNNNNNNNNNNNAG---| AG U U AA CGGUGUCA
UUAUGCU CUUCUAGGUAGUCGC CU GGGU CU \
GAUACGA GAAGGUCCGUCAGUG GA CUCA GA A
CAACAACAGCAACUAACCCC^ G- U - GC CUGUCGGA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
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| Mature sequence |
Efe-Mir-2687_5p |
| mirBase accession | None |
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| Sequence |
0- UAGGUAGUCGCUCUUGGGUAACU -23
Get sequence
|
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| Star sequence |
Efe-Mir-2687_3p* |
| mirBase accession | None |
|---|
| Sequence |
42- CGACUCAGUGUGACUGCCUGGA -64
Get sequence
|
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