| MirGeneDB ID | Efe-Mir-2705 |
|---|
| Family name |
MIR-2705 (all species) |
|---|
| Seed |
CUGCAAG |
|---|
| Species |
Common brandling worm (Eisenia fetida) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Cte-Mir-2705
Pdu-Mir-2705
|
|---|
| Node of Origin (locus) |
Pleistoannelida
|
|---|
| Node of Origin (family) |
Pleistoannelida
|
|---|
Genome context
(Efe_combined) |
Efet.01.128324: 1452-1520 [-]
|
|---|
Precursor
(pre-Mir +30nt flank) |
CAAUGGGAAGAUGGCGGCACUCGUUCGUGGGGCAGCUUUUGCCUUAGCAAAUGUUGGUUCAACGUUUUCAUAUUCAUCUGCAAGGCAAAGUGCUGUCGCAACGAGAGAAUGCCCUACAAUGUGCAACGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CAAUGGGAAGAUGGCGGCA-----| UCG G - A A UUGGUUCAAC
CUCGU UG GGCAGC UUUUGCCUU GCA AUG \
GAGCA AC CUGUCG GAAACGGAA CGU UAC G
GGCAACGUGUAACAUCCCGUAAGA^ --- G U - C UUAUACUUUU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
|
|---|
| Comment | A star has not yet been recorded from this miRNA but it is deeply conserved across annelids. |
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Efe-Mir-2705_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- GGCAGCUUUUGCCUUAGCAAAUG -23
Get sequence
|
|---|
| Mature sequence |
Efe-Mir-2705_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
46- UCUGCAAGGCAAAGUGCUGUCGC -69
Get sequence
|
|---|
