| MirGeneDB ID | Esc-Mir-12501 |
|---|
| Family name |
MIR-12501 (all species) |
|---|
| Seed |
CGGUCAU |
|---|
| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Npo-Mir-12501
Obi-Mir-12501
Ovu-Mir-12501
|
|---|
| Node of Origin (locus) |
Cephalopoda
|
|---|
| Node of Origin (family) |
Cephalopoda
|
|---|
Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-4_pre_SRIE01029538.1:715110-715367: 101-158 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AUAAGUAAGCUACAUUAAAGUUGGUUGCAACAGGGUAGAUAUAGGGCCCGUGUAGAUUUGAAUCCGUCGGUCAUAUGUCUGCCUGAUUGUAAUCGAUUUAAACCACAACGUUUAAGAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUAAGUAAGCUACAUUA--| CA G CG UAGAU
AAGUUGGUUGCAA GGGUAGAUAUA GGCC UG U
UUUAGCUAAUGUU UCCGUCUGUAU CUGG GC U
UAGAAUUUGCAACACCAAA^ AG A CU CUAAG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Esc-Mir-12501_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- CAGGGUAGAUAUAGGGCCCGUG -22
Get sequence
|
|---|
| Mature sequence |
Esc-Mir-12501_3p |
| mirBase accession | None |
|---|
| Sequence |
36- UCGGUCAUAUGUCUGCCUGAUU -58
Get sequence
|
|---|
