| MirGeneDB ID | Obi-Mir-12501 |
|---|
| Family name |
MIR-12501 (all species) |
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| Seed |
CGGUCAU |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Esc-Mir-12501
Npo-Mir-12501
Ovu-Mir-12501
|
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| Node of Origin (locus) |
Cephalopoda
|
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| Node of Origin (family) |
Cephalopoda
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Genome context
(PRJNA270931_OBI) |
KQ417152: 826222-826279 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GCUGUCCAGAAAAGACAAAAUUGAUUGCAGUAAGGCAGAUAUAGGGCCCGUGUAGCUGAAAUUCCGUCGGUCAUAUGUCUGCCUGAUUUCAGUCAAUUUAAUAUUCACCAUCGCAUAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GCUGUCCAGAAAAGACA--| C A G CG UAGCU
AAAUUGAUUG AGU AGGCAGAUAUA GGCC UG G
UUUAACUGAC UUA UCCGUCUGUAU CUGG GC A
CAUACGCUACCACUUAUAA^ U G A CU CUUAA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Obi-Mir-12501_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- UAAGGCAGAUAUAGGGCCCGUG -22
Get sequence
|
|---|
| Mature sequence |
Obi-Mir-12501_3p |
| mirBase accession | None |
|---|
| Sequence |
36- UCGGUCAUAUGUCUGCCUGAUU -58
Get sequence
|
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