| MirGeneDB ID | Esc-Mir-12504 |
|---|
| Family name |
MIR-12504 (all species) |
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| Seed |
UUGCUAU |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Npo-Mir-12504
Obi-Mir-12504
Ovu-Mir-12504
|
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| Node of Origin (locus) |
Cephalopoda
|
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| Node of Origin (family) |
Cephalopoda
|
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Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-7_pre_SRIE01045851.1:1003677-1003935: 101-159 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
AGUUAUUCUCCCUGGUGGGAAUCUUUGGCCAUUGCUAUGCGAAUGACUGUUUCAUGAGAUAAACAUGACAUUUAUUCGAAUAGUAAUAGUCGAGGCUGCCCUGAUCGUCAGGCAUGAUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGUUAUUCUCCCUGGUG--| AAU C G C UCAUGAG
GG CUUUGGC AUUGCUAU CGAAUGA UGUU \
CC GGAGCUG UAAUGAUA GCUUAUU ACAG A
GUAGUACGGACUGCUAGUC^ GUC A A U UACAAAU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Esc-Mir-12504_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AUUGCUAUGCGAAUGACUGUUU -22
Get sequence
|
|---|
| Star sequence |
Esc-Mir-12504_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- ACAUUUAUUCGAAUAGUAAUAG -59
Get sequence
|
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