| MirGeneDB ID | Esc-Mir-12518 |
|---|
| Family name |
MIR-12518 (all species) |
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| Seed |
AUUAGAA |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Obi-Mir-12518
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| Node of Origin (locus) |
Coleoidea
|
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| Node of Origin (family) |
Coleoidea
|
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Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-21_pre_SRIE01012948.1:15291-15547: 101-157 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CGAUUCGAUUCCAUUCUGUGAAUACCCAAGUAUUAGAAAGUCGUAAGUGUCAAUCAAUCUAUGUGACACUGGCGACCUUCUAAAACGUGGUUGUUCAACGUUACAACGGAAUCAGCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CGAUUCGAUUCCAUUCUG--| C A A A A AUCAA
UGAAUA CCA GU UUAGAA GUCGU AGUGUCA \
ACUUGU GGU CA AAUCUU CAGCG UCACAGU U
ACGACUAAGGCAACAUUGCA^ U G A C G GUAUC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Esc-Mir-12518_5p |
| mirBase accession | None |
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| Sequence |
0- UAUUAGAAAGUCGUAAGUGUCA -22
Get sequence
|
|---|
| Star sequence |
Esc-Mir-12518_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- ACACUGGCGACCUUCUAAAACG -57
Get sequence
|
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