| MirGeneDB ID | Esc-Mir-12533 |
|---|
| Family name |
MIR-12533 (all species) |
|---|
| Seed |
UUUUCCA |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Obi-Mir-12533
Ovu-Mir-12533
|
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| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Coleoidea
|
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Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-36_pre_SRIE01010976.1:322208-322469: 101-162 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CUUACAGUGACAUUGUAAAGUGCCUGAAGACUUUUCCAUUCGUCUGAGGUCAUUCAGAGUUUUGCCCGUGUAGCCCAGAAGUAUGGAAAGUCUGCAAGCAUCUAUCAUUCUUCUCAGAUCUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CUUACAGUGACAUUGUAAA--| C A U UCG A UC UCAGAGU
GUGC UG AGACUUU CCAU UCUG GG AU U
UACG AC UCUGAAA GGUA AGAC CC UG U
AUCUAGACUCUUCUUACUAUC^ A G - UGA - GA UGCCCGU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Mature sequence |
Esc-Mir-12533_5p |
| mirBase accession | None |
|---|
| Sequence |
0- CUUUUCCAUUCGUCUGAGGUCAUU -24
Get sequence
|
|---|
| Co-mature sequence |
Esc-Mir-12533_3p |
| mirBase accession | None |
|---|
| Sequence |
40- UAGCCCAGAAGUAUGGAAAGUC -62
Get sequence
|
|---|
