| MirGeneDB ID | Obi-Mir-12533 |
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| Family name |
MIR-12533 (all species) |
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| Seed |
AGCCCAG |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Esc-Mir-12533
Ovu-Mir-12533
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| Node of Origin (locus) |
Coleoidea
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| Node of Origin (family) |
Coleoidea
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Genome context
(PRJNA270931_OBI) |
KQ416243: 2383432-2383493 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GUGAAUUGCAGAACUAUCACAGUCUGAAGGCUUUUCCAUUCUUCUGCGGUAAUUCAACGCCAUGUCAGUGUAGCCCAGAUGAAUGGAAAGUCACCAGGUUGAUGUCAAACAACUGAACGAUG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GUGAAUUGCAGAACUAUCA--| GU AA U U C A UCAACGC
CA CUG GGCUUU CCAUUC UCUG GGU AU C
GU GAC CUGAAA GGUAAG AGAC CCG UG A
GUAGCAAGUCAACAAACUGUA^ UG CA - U - A UGACUGU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Obi-Mir-12533_5p* |
| mirBase accession | None |
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| Sequence |
0- CUUUUCCAUUCUUCUGCGGUAAUU -24
Get sequence
|
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| Mature sequence |
Obi-Mir-12533_3p |
| mirBase accession | None |
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| Sequence |
40- UAGCCCAGAUGAAUGGAAAGUC -62
Get sequence
|
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