| MirGeneDB ID | Esc-Mir-12540-v2 |
|---|---|
| Family name | MIR-12540 (all species) |
| Seed | UCAAGAC |
| Species | Hawaiian bobtail squid (Euprymna scolopes) |
| MiRBase ID | |
| Paralogues | Esc-Mir-12540-v1 |
| Orthologues | Obi-Mir-12540 Ovu-Mir-12540 |
| Node of Origin (locus) | Coleoidea |
| Node of Origin (family) | Coleoidea |
| Genome context (GCA_004765925.1_miRNA_LOCI) |
|
| Precursor (pre-Mir +30nt flank) | CCUUCAGCAUGGCCUUUGACAGUUUACACGACACUUCGCUAUCAAGACCAUGGUGAGAGUCGet precursor sequence |
| Structure | 10 20 30 CC--| G CC C UUACAC UUCA CAUGG UUUGA AGU G GAGU GUACC GAACU UCG A CUGA^ G A- A CUUCAC 60 50 40 |
| Deep sequencing | |
| Comment | Although the 3' uridine is templated this give a three 3-nt offset. |
| 3' NTU | Yes |
| Motifs | No |
| Star sequence | Esc-Mir-12540-v2_5p* |
| mirBase accession | None |
| Sequence |
0- CCUUCAGCAUGGCCUUUGACAG -22
Get sequence
|
| Mature sequence | Esc-Mir-12540-v2_3p |
| mirBase accession | None |
| Sequence |
40- AUCAAGACCAUGGUGAGAGUC -61
Get sequence
|
