| MirGeneDB ID | Obi-Mir-12540 |
|---|
| Family name |
MIR-12540 (all species) |
|---|
| Seed |
AUCAAGA |
|---|
| Species |
California two-spot octopus (Octopus bimaculoides) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Esc-Mir-12540-v1
Esc-Mir-12540-v2
Ovu-Mir-12540
|
|---|
| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Coleoidea
|
|---|
Genome context
(PRJNA270931_OBI) |
KQ417573: 495354-495414 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CAAAGGCUGCAACAUAAGUGUCGUGGAGGACUUUCAGCAUGAUCUUUGAGAGUAUUUUCUGCAUUCCGCUAUCAAGACCAUGGUGAGAGUCUGCCGCAACAGUAUUUUCAACUGUUUGUCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CAAAGGCUGCAACAUAAG--| C A G A U G AUUUUC
UGU GUGG GGACUUUCA CAUG UCUU GA AGU U
ACA CGCC UCUGAGAGU GUAC AGAA CU UCG G
ACUGUUUGUCAACUUUUAUG^ A G G C - A CCUUAC
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Drosha cut +1 on the 5p arm. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Obi-Mir-12540_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CUUUCAGCAUGAUCUUUGAGAGU -23
Get sequence
|
|---|
| Mature sequence |
Obi-Mir-12540_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UAUCAAGACCAUGGUGAGAGUC -61
Get sequence
|
|---|
