| MirGeneDB ID | Esc-Mir-12542 |
|---|
| Family name |
MIR-12542 (all species) |
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| Seed |
GCUGGAA |
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| Species |
Hawaiian bobtail squid (Euprymna scolopes) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Obi-Mir-12542
Ovu-Mir-12542
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| Node of Origin (locus) |
Coleoidea
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| Node of Origin (family) |
Coleoidea
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Genome context
(GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-45_pre_SRIE01025868.1:373125-373267: 43-101 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AGAAGAAGAUUAACGAUGCUCACUCAGAGCUGCUGGAAAGCAGAGGAAGACUUUUGAUAUGUGCAUAGAUUCCGCUUCUCUCCGGUGAUUCUCAUGAGCACAAUCUCAUCCUAGGAACA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGAAGAAGAUUAACGAU---| CUC CU A C A GA UUUGAU
GCUCA AGAG GCUGGA AG AG GGAA CU A
CGAGU UCUU UGGCCU UC UC CCUU GA U
ACAAGGAUCCUACUCUAACA^ AC- AG C U G A- UACGUG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
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| Mature sequence |
Esc-Mir-12542_5p |
| mirBase accession | None |
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| Sequence |
0- UGCUGGAAAGCAGAGGAAGACU -22
Get sequence
|
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| Star sequence |
Esc-Mir-12542_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- GAUUCCGCUUCUCUCCGGUGAU -59
Get sequence
|
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