| MirGeneDB ID | Obi-Mir-12542 |
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| Family name |
MIR-12542 (all species) |
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| Seed |
GCUGGAA |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Esc-Mir-12542
Ovu-Mir-12542
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| Node of Origin (locus) |
Coleoidea
|
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| Node of Origin (family) |
Coleoidea
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Genome context
(PRJNA270931_OBI) |
KQ417285: 339945-340003 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AAGUCAGUUGCCAUAUUGUUCAUUCGGAACUGCUGGAAAGCAGAGGAAGACUUUUGUUGCAUGCAUAGAUUCCGCUUCUCUCCGGUGAUUUCUGAUGAGCUAAAAUCUCUUGGCUAACU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AAGUCAGUUGCCAUAUU--| C CU A C A GA UUUGUU
GUUCAUU GGAA GCUGGA AG AG GGAA CU G
CGAGUAG CUUU UGGCCU UC UC CCUU GA C
UCAAUCGGUUCUCUAAAAU^ U AG C U G A- UACGUA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
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| Mature sequence |
Obi-Mir-12542_5p |
| mirBase accession | None |
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| Sequence |
0- UGCUGGAAAGCAGAGGAAGACU -22
Get sequence
|
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| Star sequence |
Obi-Mir-12542_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- GAUUCCGCUUCUCUCCGGUGAU -59
Get sequence
|
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