MirGeneDB 2.1

MirGeneDB ID

Esc-Novel-18

Family name COL-NOVEL-18 (all species)
Seed AGAUUCG
Species Hawaiian bobtail squid (Euprymna scolopes)
MiRBase ID
Paralogues
Orthologues Obi-Novel-18  Ovu-Novel-18 
Node of Origin (locus) Coleoidea
Node of Origin (family) Coleoidea
Genome context
(GCA_004765925.1_miRNA_LOCI)
Esc-Novel-18_pre_SRIE01058300.1:1909880-1910023: 44-101 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUUGUGAUAUGCAAUAUUGUUCAAGGUCCGUAGAUUCGAGUCCGGGUCGGAGAUAAAAUCUAGACUCUGACCGGAAAUCGAACCUACAAACCUUGGAUUACGAGCAGCAAUAGAUAGU
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Structure
        10          20        30        40         50        
AUUGUGAUAUGCAAUAUU--         CC    A     G-|    G      AUAAA 
                    GUUCAAGGU  GUAG UUCGA  UCCGG UCGGAG     A
                    UAGGUUCCA  CAUC AAGCU  AGGCC AGUCUC     U
UGAUAGAUAACGACGAGCAU         AA    C     AA^    -      AGAUC 
      110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ce Li
Mature sequence

Esc-Novel-18_5p

mirBase accessionNone
Sequence
0- UAGAUUCGAGUCCGGGUCGGAG -22
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Star sequence

Esc-Novel-18_3p*

mirBase accessionNone
Sequence
36- CUGACCGGAAAUCGAACCUACA -58
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