MirGeneDB ID | Esc-Novel-22-v1 |
Family name |
COL-NOVEL-22 (all species) |
Seed |
UUUCUGU |
Species |
Hawaiian bobtail squid (Euprymna scolopes) |
MiRBase ID |
|
Paralogues |
Esc-Novel-22-v2
|
Orthologues |
Obi-Novel-22
Ovu-Novel-22
|
Node of Origin (locus) |
Coleoidea
|
Node of Origin (family) |
Coleoidea
|
Genome context (GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-22-v1_pre_SRIE01046427.1:101401-101659: 101-159 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGGAGGUAGAUACUUGGCGAUUGGGGUACGUUUUCUGUUGCGCCAAGGGCAUAUUCGUAUUCUCUAUGCUCUGUCGCACCAAGAAGACAUAUCUGUCGCCUCCGCUACAUCACUACCUC
Get precursor sequence
|
Structure | 10 20 30 40 50
UGGAGGUAGAUACUUGG----| UG C GU- CCA UUCGU
CGAU GGGUA GUUUUCU UGCG AGGGCAUA \
GCUG UCUAU CAGAAGA ACGC UCUCGUAU A
CUCCAUCACUACAUCGCCUCC^ -- A ACC UG- CUCUU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Esc-Novel-22-v1_5p |
mirBase accession | None |
Sequence |
0- UUUUCUGUUGCGCCAAGGGCAUA -23
Get sequence
|
Star sequence |
Esc-Novel-22-v1_3p* |
mirBase accession | None |
Sequence |
36- UGCUCUGUCGCACCAAGAAGACA -59
Get sequence
|