| MirGeneDB ID | Obi-Novel-22 |
|---|
| Family name |
COL-NOVEL-22 (all species) |
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| Seed |
UUUCUGU |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Esc-Novel-22-v1
Esc-Novel-22-v2
Ovu-Novel-22
|
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| Node of Origin (locus) |
Coleoidea
|
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| Node of Origin (family) |
Coleoidea
|
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Genome context
(PRJNA270931_OBI) |
KQ429859: 127037-127095 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UUGAGUUAAAACCUUGGCGUUCAGGAUAUGUUUUCUGUUGCGCCAAGGGCAUACGUAUUUCUACUAUGCUCUGUCGUACCAAGAAGACAUAUCUAUCGCUCCUUCUCCACUGACUUCGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUGAGUUAAAACCUUGGC-- UCA GU-| CCA CGUAU
GU GGAUAUGUUUUCU UGCG AGGGCAUA \
CG UCUAUACAGAAGA AUGC UCUCGUAU U
AGCUUCAGUCACCUCUUCCU CUA ACC^ UG- CAUCU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Drosha cut +1 on both arms. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Obi-Novel-22_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UUUUCUGUUGCGCCAAGGGCAUA -23
Get sequence
|
|---|
| Co-mature sequence |
Obi-Novel-22_3p |
| mirBase accession | None |
|---|
| Sequence |
36- UGCUCUGUCGUACCAAGAAGACA -59
Get sequence
|
|---|
