MirGeneDB ID | Esc-Novel-24-v2 |
Family name |
COL-NOVEL-24 (all species) |
Seed |
UUUAGUG |
Species |
Hawaiian bobtail squid (Euprymna scolopes) |
MiRBase ID |
|
Paralogues |
Esc-Novel-24-v1
Esc-Novel-24-v3
|
Orthologues |
Obi-Novel-24-v2
Ovu-Novel-24-v2
|
Node of Origin (locus) |
Coleoidea
|
Node of Origin (family) |
Coleoidea
|
Genome context (GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-24-v1_pre_SRIE01049505.1:4983878-4984017: 40-101 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAGUCAGAAGGAAGCUUGUUUUCGUUCGCUAGCUGGUUAUGUGAACUAAGAUUCAUUUCUUUAUCAAAUAUUUAGUGCACAUAACUGGCUGACGAACAAAGCGCUAUUCGUCCAAUCACCGC
Get precursor sequence
|
Structure | 10 20 30 40 50
AAGUCAGAAGGAAGCUU---| C C UG A - CAUUUC
GUUUU GUUCG UAGC GUUAUGUG ACUAAG AUU \
CGAAA CAAGC GUCG CAAUACAC UGAUUU UAA U
CGCCACUAACCUGCUUAUCG^ - A GU G A ACUAUU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Esc-Novel-24-v2_5p* |
mirBase accession | None |
Sequence |
0- AGCUGGUUAUGUGAACUAAGAUU -23
Get sequence
|
Mature sequence |
Esc-Novel-24-v2_3p |
mirBase accession | None |
Sequence |
39- AUUUAGUGCACAUAACUGGCUGA -62
Get sequence
|