MirGeneDB ID | Ovu-Novel-24-v2 |
Family name |
COL-NOVEL-24 (all species) |
Seed |
UUUAGUG |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
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Paralogues |
Ovu-Novel-24-v1
Ovu-Novel-24-v3
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Orthologues |
Esc-Novel-24-v2
Obi-Novel-24-v2
|
Node of Origin (locus) |
Coleoidea
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Node of Origin (family) |
Coleoidea
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Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01029285.1: 1863-1924 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
CAAGAAGAUUAGAGUACAAUUCCGAUCGUUAGCUGGUUAUGUGAACUAAGAUUCAUUUCCUUAUCAAAUAUUUAGUGCACAUAACUGGCUGAUGAAUAGAAUUUGUUAUCGUCUCGGAAAUC
Get precursor sequence
|
Structure | 10 20 30 40 50
CAAGAAGAUUAGAGUAC-- CGA UG A -| CAUUUC
AAUUC UCGUUAGC GUUAUGUG ACUAAG AUU \
UUAAG AGUAGUCG CAAUACAC UGAUUU UAA C
CUAAAGGCUCUGCUAUUGU AUA GU G A^ ACUAUU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
No |
No |
No |
No |
No |
No |
No |
No |
No |
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Star sequence |
Ovu-Novel-24-v2_5p* |
mirBase accession | None |
Sequence |
0- AGCUGGUUAUGUGAACUAAGAUU -23
Get sequence
|
Mature sequence |
Ovu-Novel-24-v2_3p |
mirBase accession | None |
Sequence |
39- AUUUAGUGCACAUAACUGGCUGA -62
Get sequence
|