MirGeneDB ID | Esc-Novel-25-v1 |
Family name |
COL-NOVEL-25 (all species) |
Seed |
UCGUGUA |
Species |
Hawaiian bobtail squid (Euprymna scolopes) |
MiRBase ID |
|
Paralogues |
Esc-Novel-25-v2
|
Orthologues |
Obi-Novel-25-v1
Ovu-Novel-25-v1
|
Node of Origin (locus) |
Coleoidea
|
Node of Origin (family) |
Coleoidea
|
Genome context (GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-25-v1_pre_SRIE01050902.1:2194681-2194822: 42-101 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCACGUUCAUUUUGAAUCGGUCUAACGUAACUCGUGUAACAGUUCUGAAGCCUGGAACAUUUGACGAGGUUUAAGACUGUCCCACGGGCUAAGUGAGGCUUGCAAACAUCAUGAUUUUUU
Get precursor sequence
|
Structure | 10 20 30 40 50
GCACGUUCAUUUUGAAUC--| A G A UA U G UGGAACA
GGUCU AC UA CUCGUG ACAGU CU AAGCC \
UCGGA UG AU GGGCAC UGUCA GA UUUGG U
UUUUUUAGUACUACAAACGU^ G A C CC - A AGCAGUU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Esc-Novel-25-v1_5p |
mirBase accession | None |
Sequence |
0- CUCGUGUAACAGUUCUGAAGCC -22
Get sequence
|
Co-mature sequence |
Esc-Novel-25-v1_3p |
mirBase accession | None |
Sequence |
39- UUUAAGACUGUCCCACGGGCU -60
Get sequence
|