MirGeneDB ID | Esc-Novel-25-v2 |
Family name |
COL-NOVEL-25 (all species) |
Seed |
UUUAAGA |
Species |
Hawaiian bobtail squid (Euprymna scolopes) |
MiRBase ID |
|
Paralogues |
Esc-Novel-25-v1
|
Orthologues |
Obi-Novel-25-v2
Ovu-Novel-25-v2
|
Node of Origin (locus) |
Coleoidea
|
Node of Origin (family) |
Coleoidea
|
Genome context (GCA_004765925.1_miRNA_LOCI) |
Esc-Novel-25-v1_pre_SRIE01050902.1:2194681-2194822: 43-100 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CACGUUCAUUUUGAAUCGGUCUAACGUAACUCGUGUAACAGUUCUGAAGCCUGGAACAUUUGACGAGGUUUAAGACUGUCCCACGGGCUAAGUGAGGCUUGCAAACAUCAUGAUUUUU
Get precursor sequence
|
Structure | 10 20 30 40 50
CACGUUCAUUUUGAAUC--| A G A UA U G GGAACA
GGUCU AC UA CUCGUG ACAGU CU AAGCCU \
UCGGA UG AU GGGCAC UGUCA GA UUUGGA U
UUUUUAGUACUACAAACGU^ G A C CC - A GCAGUU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Esc-Novel-25-v2_5p* |
mirBase accession | None |
Sequence |
0- UCGUGUAACAGUUCUGAAGCCU -22
Get sequence
|
Mature sequence |
Esc-Novel-25-v2_3p |
mirBase accession | None |
Sequence |
37- GUUUAAGACUGUCCCACGGGC -58
Get sequence
|