MirGeneDB 3.0
MirGeneDB ID

Gsa-Mir-124-o6

Family name MIR-124 (all species)
Seed AAGGCAC
Species Russian doll killer (Gyrodactylus salaris)
MiRBase ID gsa-mir-124a
Paralogues Gsa-Mir-124-o7 
Orthologues Aae-Mir-124  Aga-Mir-124  Agr-Mir-124  Asu-Mir-124  Bfl-Mir-124  Bge-Mir-124  Bko-Mir-124  Bla-Mir-124  Bpl-Mir-124  Cel-Mir-124  Cte-Mir-124  Dan-Mir-124  Dlo-Mir-124  Dma-Mir-124  Dme-Mir-124  Dmo-Mir-124  Dpu-Mir-124  Dsi-Mir-124  Dya-Mir-124  Eba-Mir-124  Ebu-Mir-124-P6-v1  Ebu-Mir-124-P6-v2  Esc-Mir-124  Gpa-Mir-124  Gsp-Mir-124  Hme-Mir-124  Hru-Mir-124  Isc-Mir-124  Lan-Mir-124  Lhy-Mir-124  Llo-Mir-124  Mgi-Mir-124  Mom-Mir-124  Npo-Mir-124  Obi-Mir-124  Ofu-Mir-124  Ovu-Mir-124  Pau-Mir-124  Pdu-Mir-124  Pfl-Mir-124  Pmi-Mir-124  Pve-Mir-124  Sko-Mir-124  Sma-Mir-124  Sne-Mir-124  Snu-Mir-124  Spu-Mir-124  Sro-Mir-124  Tca-Mir-124  War-Mir-124  Xbo-Mir-124 
Node of Origin (locus) G. salaris
Node of Origin (family) Bilateria
Genome context
(gyrodactylus_salaris.PRJNA244375.WBPS19.genomic)		 scf7180006948914: 6447-6516 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAAGAUUUGGAAAGGAUGAACUAUAGAUCUGGUAUUUUCCACGAAGUCUUAGGAAGUUGAAAAAUAAAAUAUUUAACUUAAGGCACGCGGUGAAUACCAAAGCUAUCAUCUUAAACUACCUUGUAACUAU
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Structure
        10           20        30        40        50        60     
GAAGAUUUGGAAAGGAU---| ACU    AUC        U  A  AA        AAGUUGAAAAA 
                    GA   AUAG   UGGUAUUU CC CG  GUCUUAGG           \
                    CU   UAUC   ACCAUAAG GG GC  CGGAAUUC           U
UAUCAAUGUUCCAUCAAAUU^ AC-    GAA        U  C  A-        AAUUUAUAAAA 
.       120       110        100        90         80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Gsa-Mir-124-o6_5p*
mirBase accessionMIMAT0035274
Sequence 
0- GGUAUUUUCCACGAAGUCUUAGG -23
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Mature sequence

Gsa-Mir-124-o6_3p
mirBase accessionMIMAT0035275
Sequence 
48- UAAGGCACGCGGUGAAUACCAA -70
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