| MirGeneDB ID | Hme-Novel-1 |
|---|
| Family name |
HME-NOVEL-1 (all species) |
|---|
| Seed |
UUCGCCU |
|---|
| Species |
Longwing butterfly (Heliconius melpomene) |
|---|
| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
H. melpomene
|
|---|
| Node of Origin (family) |
H. melpomene
|
|---|
Genome context
(Hmel_1) |
HE672018: 201434-201493 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CACGCUCAUGUAUUAGAUUGAAGAGGUUGAUGGCAGAGUACGAGGCGAAAGAGGUAUGUAGAGAUCUCUUUCGCCUCGAACACUGUCAUCAACCUCUUCAUACAUGCCCUCUGUGGAGUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CACGCUCAUGUAUUAGAU--| A A GGUAUG
UGAAGAGGUUGAUGGCAG GU CGAGGCGAAAGA U
ACUUCUCCAACUACUGUC CA GCUCCGCUUUCU A
CUGAGGUGUCUCCCGUACAU^ A A CUAGAG
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Hme-Novel-1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UGGCAGAGUACGAGGCGAAAGA -22
Get sequence
|
|---|
| Mature sequence |
Hme-Novel-1_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UUUCGCCUCGAACACUGUCAUC -60
Get sequence
|
|---|
