| MirGeneDB ID | Hmi-Mir-12497-P2 |
|---|
| Family name |
MIR-12497 (all species) |
|---|
| Seed |
CCAGAGA |
|---|
| Species |
Panther worm (Hofstenia miamia) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Hmi-Mir-12497-P1
|
|---|
| Orthologues |
Sro-Mir-12497
|
|---|
| Node of Origin (locus) |
H. miamia
|
|---|
| Node of Origin (family) |
Acoela
|
|---|
Genome context
(Hofstenia_miamia.HmiaM1.dna.nonchromosomal) |
SCFE01000240.1: 637242-637294 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AAGUCAUGAUAAGGUCAGCAUGCAUUUAUUCGGGUGUGGUGAUUUCUGUACUUUCUAAAAGCCAGAGAUCCCCAGAACCCUAUAAAAUGUUUGCACAUUCGCCAUAAAAGACA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAGUCAUGAUAAGGUCA-- U AUUC G-| U UA UC
GCA GCAUUU GGGU UGG GAUUUCUG CUU \
CGU UGUAAA CCCA ACC CUAGAGAC GAA U
ACAGAAAAUACCGCUUACA U AUAU AG^ C C- AA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Hmi-Mir-12497-P2_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- CGGGUGUGGUGAUUUCUGUACUU -23
Get sequence
|
|---|
| Mature sequence |
Hmi-Mir-12497-P2_3p |
| mirBase accession | None |
|---|
| Sequence |
30- GCCAGAGAUCCCCAGAACCCUAU -53
Get sequence
|
|---|
