MirGeneDB ID | Hru-Mir-1988 |
Family name |
MIR-1988 (all species) |
Seed |
GUGGUUU |
Species |
Red Abalone (Haliotis rufescens) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Lgi-Mir-1988
|
Node of Origin (locus) |
Gastropoda
|
Node of Origin (family) |
Gastropoda
|
Genome context (GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces) |
JALGQA010000010.1: 9665708-9665765 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUCAGUACCGAAAGUGACGGUGCCAGGUCCAGUGGUUUUCCGUUGCACAUGCUUAGUGCUGUACGCAUGCGCAACUGAAAAUCAACGGCACUGGCACUGAUGUCGUCCCGCCUUGGAU
Get precursor sequence
|
Structure | 10 20 30 40 50
UUCAGUACCGAAAGUGA--| GU AG C A UUAGU
CGGUGCCAG CC UGGUUUUC GUUGC CAUGC G
GUCACGGUC GG ACUAAAAG CAACG GUACG C
UAGGUUCCGCCCUGCUGUA^ AC CA U C CAUGU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Hru-Mir-1988_5p |
mirBase accession | None |
Sequence |
0- AGUGGUUUUCCGUUGCACAUGC -22
Get sequence
|
Co-mature sequence |
Hru-Mir-1988_3p |
mirBase accession | None |
Sequence |
36- AUGCGCAACUGAAAAUCAACGG -58
Get sequence
|