MirGeneDB 3.0

MirGeneDB ID

Hru-Mir-1988

Family name MIR-1988 (all species)
Seed GUGGUUU
Species Red Abalone (Haliotis rufescens)
MiRBase ID
Paralogues
Orthologues Lgi-Mir-1988 
Node of Origin (locus) Gastropoda
Node of Origin (family) Gastropoda
Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces)
JALGQA010000010.1: 9665708-9665765 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUCAGUACCGAAAGUGACGGUGCCAGGUCCAGUGGUUUUCCGUUGCACAUGCUUAGUGCUGUACGCAUGCGCAACUGAAAAUCAACGGCACUGGCACUGAUGUCGUCCCGCCUUGGAU
Get precursor sequence
Structure
        10          20        30        40        50        
UUCAGUACCGAAAGUGA--|        GU  AG        C     A     UUAGU 
                   CGGUGCCAG  CC  UGGUUUUC GUUGC CAUGC     G
                   GUCACGGUC  GG  ACUAAAAG CAACG GUACG     C
UAGGUUCCGCCCUGCUGUA^        AC  CA        U     C     CAUGU 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To To
Mature sequence

Hru-Mir-1988_5p

mirBase accessionNone
Sequence
0- AGUGGUUUUCCGUUGCACAUGC -22
Get sequence
Co-mature sequence

Hru-Mir-1988_3p

mirBase accessionNone
Sequence
36- AUGCGCAACUGAAAAUCAACGG -58
Get sequence