| MirGeneDB ID | Hru-Novel-2 |
|---|
| Family name |
HRU-NOVEL-2 (all species) |
|---|
| Seed |
ACUCCCG |
|---|
| Species |
Red Abalone (Haliotis rufescens) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
H. rufescens
|
|---|
| Node of Origin (family) |
H. rufescens
|
|---|
Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces) |
gb|JALGQB010000024.1|:6030563-6030826: 91-144 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AUCGGGUUGCCAAACAUAGCCUCGUUCCCUCACUCCCGUUGUCCUAAGCGUUGCUCCCGAGACGCAAAGGUUGAUGGGAGUCGGGGAUCUCGGCUACUUUCGUCCUUUACCGGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUCGGGUUGCCAAACAU--| UCGU C U AA GCU
AGCC UCCCU ACUCCCGUUG CCU GCGUU C
UCGG AGGGG UGAGGGUAGU GGA CGCAG C
AGGCCAUUUCCUGCUUUCA^ CUCU C U AA AGC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Hru-Novel-2_5p |
| mirBase accession | None |
|---|
| Sequence |
0- CACUCCCGUUGUCCUAAGCGUU -22
Get sequence
|
|---|
| Star sequence |
Hru-Novel-2_3p* |
| mirBase accession | None |
|---|
| Sequence |
32- CGCAAAGGUUGAUGGGAGUCGG -54
Get sequence
|
|---|
