MirGeneDB ID | Hru-Novel-3 |
Family name |
HRU-NOVEL-3 (all species) |
Seed |
GGUCAGU |
Species |
Red Abalone (Haliotis rufescens) |
MiRBase ID |
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
H. rufescens
|
Node of Origin (family) |
H. rufescens
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Genome context (GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces) |
JALGQA010000021.1: 12337555-12337613 [-]
UCSC
Ensembl
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Precursor (pre-Mir +30nt flank) |
CUGUCAAUGCCCAUAUUUGGCCCAUUGAGGAGGUCAGUCGAUCAGAUGGCUUGUACGUAAACAGAGAGCUCUCUGAUUGGUUCACCUUCUUGAUGACGUCACUAUCUACAAACGUAGAC
Get precursor sequence
|
Structure | 10 20 30 40 50
CUGUCAAUGCCCAUAUU- C-| UG C GU U GUACGU
UGGC CAU AGGAGGU A CGAUCAGA GGCUU \
ACUG GUA UCUUCCA U GUUAGUCU UCGAG A
CAGAUGCAAACAUCUAUC CA^ GU C UG C AGACAA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Mature sequence |
Hru-Novel-3_5p |
mirBase accession | None |
Sequence |
0- AGGUCAGUCGAUCAGAUGGCUU -22
Get sequence
|
Star sequence |
Hru-Novel-3_3p* |
mirBase accession | None |
Sequence |
37- GCUCUCUGAUUGGUUCACCUUC -59
Get sequence
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