MirGeneDB 3.0

MirGeneDB ID

Hru-Novel-3

Family name HRU-NOVEL-3 (all species)
Seed GGUCAGU
Species Red Abalone (Haliotis rufescens)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) H. rufescens
Node of Origin (family) H. rufescens
Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces)
JALGQA010000021.1: 12337555-12337613 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGUCAAUGCCCAUAUUUGGCCCAUUGAGGAGGUCAGUCGAUCAGAUGGCUUGUACGUAAACAGAGAGCUCUCUGAUUGGUUCACCUUCUUGAUGACGUCACUAUCUACAAACGUAGAC
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Structure
        10         20         30        40        50         
CUGUCAAUGCCCAUAUU-    C-|  UG       C GU        U     GUACGU 
                  UGGC  CAU  AGGAGGU A  CGAUCAGA GGCUU      \
                  ACUG  GUA  UCUUCCA U  GUUAGUCU UCGAG      A
CAGAUGCAAACAUCUAUC    CA^  GU       C UG        C     AGACAA 
       110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
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Mature sequence

Hru-Novel-3_5p

mirBase accessionNone
Sequence
0- AGGUCAGUCGAUCAGAUGGCUU -22
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Star sequence

Hru-Novel-3_3p*

mirBase accessionNone
Sequence
37- GCUCUCUGAUUGGUUCACCUUC -59
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