| MirGeneDB ID | Hru-Novel-4 |
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| Family name |
HRU-NOVEL-4 (all species) |
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| Seed |
GGUCAGU |
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| Species |
Red Abalone (Haliotis rufescens) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
H. rufescens
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| Node of Origin (family) |
H. rufescens
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Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces) |
JALGQA010000021.1: 12337555-12337613 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CUGUCAAUGCCCAUAUUUGGCCCAUUGAGGAGGUCAGUCGAUCAGAUGGCUUGUACGUAAACAGAGAGCUCUCUGAUUGGUUCACCUUCUUGAUGACGUCACUAUCUACAAACGUAGAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CUGUCAAUGCCCAUAUU- C-| UG C GU U GUACGU
UGGC CAU AGGAGGU A CGAUCAGA GGCUU \
ACUG GUA UCUUCCA U GUUAGUCU UCGAG A
CAGAUGCAAACAUCUAUC CA^ GU C UG C AGACAA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
Unknown
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Hru-Novel-4_5p |
| mirBase accession | None |
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| Sequence |
0- AGGUCAGUCGAUCAGAUGGCUU -22
Get sequence
|
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| Star sequence |
Hru-Novel-4_3p* |
| mirBase accession | None |
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| Sequence |
37- GCUCUCUGAUUGGUUCACCUUC -59
Get sequence
|
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