MirGeneDB 3.0

MirGeneDB ID

Hvu-Mir-3005

Family name MIR-3005 (all species)
Seed GGAACCG
Species Freshwater-polyp (Hydra vulgaris)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) H. vulgaris
Node of Origin (family) H. vulgaris
Genome context
(Hm105_1.0)
Sc4wPfr_198: 1138053-1138103 [-]
Precursor
(pre-Mir +30nt flank)
CAUCUUCCAGAAAAGAUAAACUGAAAAUUUAGGAACCGGUCAGUCGCCAACCAUGUUGGUUGGUGGAUGAUUGAUUCCUAAAAUUUCAGUUAAUGCAUUCGAACUUGUUGC
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Structure
        10          20        30        40        50     
CAUCUUCCAGAAAAGAUA--|       A        C      GU        AU 
                    AACUGAAA UUUAGGAA CGGUCA  CGCCAACC  \
                    UUGACUUU AAAUCCUU GUUAGU  GUGGUUGG  G
CGUUGUUCAAGCUUACGUAA^       A        A      AG        UU 
 .       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Fo Fo Fo Un
Mature sequence

Hvu-Mir-3005_5p

mirBase accessionNone
Sequence
0- AGGAACCGGUCAGUCGCCAACC -22
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Co-mature sequence

Hvu-Mir-3005_3p

mirBase accessionNone
Sequence
29- UUGGUGGAUGAUUGAUUCCUAA -51
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