MirGeneDB ID | Hvu-Mir-3005 |
Family name |
MIR-3005 (all species) |
Seed |
GGAACCG |
Species |
Freshwater-polyp (Hydra vulgaris) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
H. vulgaris
|
Node of Origin (family) |
H. vulgaris
|
Genome context (Hm105_1.0) |
Sc4wPfr_198: 1138053-1138103 [-]
|
Precursor (pre-Mir +30nt flank) |
CAUCUUCCAGAAAAGAUAAACUGAAAAUUUAGGAACCGGUCAGUCGCCAACCAUGUUGGUUGGUGGAUGAUUGAUUCCUAAAAUUUCAGUUAAUGCAUUCGAACUUGUUGC
Get precursor sequence
|
Structure | 10 20 30 40 50
CAUCUUCCAGAAAAGAUA--| A C GU AU
AACUGAAA UUUAGGAA CGGUCA CGCCAACC \
UUGACUUU AAAUCCUU GUUAGU GUGGUUGG G
CGUUGUUCAAGCUUACGUAA^ A A AG UU
. 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Hvu-Mir-3005_5p |
mirBase accession | None |
Sequence |
0- AGGAACCGGUCAGUCGCCAACC -22
Get sequence
|
Co-mature sequence |
Hvu-Mir-3005_3p |
mirBase accession | None |
Sequence |
29- UUGGUGGAUGAUUGAUUCCUAA -51
Get sequence
|