MirGeneDB 3.0

24 microRNA genes with node of origin H. vulgaris

						Sort by genome coordinates							Motifs
MirGeneDB ID ▲	MiRBase ID	Family	Seed	5p accession	3p accession	Chromosome	Start	End	Strand	Node of origin (locus)	Node of origin (family)	3' NTU	UG	UGUG	CNNC
Hvu-Mir-3003-P1	None	MIR-3003	AAAUGUG	None	None	Sc4wPfr_796	523053	523102	-	H. vulgaris	H. vulgaris	No
Hvu-Mir-3003-P2	None	MIR-3003	UAAAUGU	None	None	Sc4wPfr_90	71712	71761	+	H. vulgaris	H. vulgaris	No	1
Hvu-Mir-3005	None	MIR-3005	GGAACCG	None	None	Sc4wPfr_198	1138053	1138103	-	H. vulgaris	H. vulgaris	No
Hvu-Mir-3007-v1	None	MIR-3007	GUUCGGC	None	None	Sc4wPfr_3789	111110	111160	+	H. vulgaris	H. vulgaris	No		1
Hvu-Mir-3007-v2	None	MIR-3007	UGUUCGG	None	None	Sc4wPfr_3789	111109	111161	+	H. vulgaris	H. vulgaris	No		1
Hvu-Mir-3010	None	MIR-3010	GAGAGCG	None	None	Sc4wPfr_1021	42949	42998	+	H. vulgaris	H. vulgaris	No
Hvu-Mir-3011	None	MIR-3011	UGAUUUU	None	None	Sc4wPfr_481	321826	321879	-	H. vulgaris	H. vulgaris	No			1
Hvu-Mir-3012	None	MIR-3012	CAGUGGA	None	None	Sc4wPfr_42.2	1039725	1039778	+	H. vulgaris	H. vulgaris	No
Hvu-Novel-1	None	HVU-NOVEL-1	AGAAAAU	None	None	Sc4wPfr_1951	2522	2571	-	H. vulgaris	H. vulgaris	No
Hvu-Novel-2	None	HVU-NOVEL-2	AAAUUUC	None	None	Sc4wPfr_39	1438574	1438630	+	H. vulgaris	H. vulgaris	No
Hvu-Novel-3-v1	None	HVU-NOVEL-3	AUGCUUU	None	None	Sc4wPfr_1174	5861	5911	-	H. vulgaris	H. vulgaris	No
Hvu-Novel-3-v2	None	HVU-NOVEL-3	UAUGCUU	None	None	Sc4wPfr_1174	5861	5911	-	H. vulgaris	H. vulgaris	No
Hvu-Novel-4	None	HVU-NOVEL-4	GAAAAUG	None	None	Sc4wPfr_262.2	1237021	1237069	-	H. vulgaris	H. vulgaris	No
Hvu-Novel-5	None	HVU-NOVEL-5	GAAAGUC	None	None	Sc4wPfr_628	712925	712976	-	H. vulgaris	H. vulgaris	No
Hvu-Novel-6	None	HVU-NOVEL-6	AGAUUAA	None	None	Sc4wPfr_275	235406	235456	-	H. vulgaris	H. vulgaris	No
Hvu-Novel-7	None	HVU-NOVEL-7	ACUGAUA	None	None	Sc4wPfr_165	2626433	2626482	-	H. vulgaris	H. vulgaris	No		1
Hvu-Novel-8	None	HVU-NOVEL-8	GAGAACU	None	None	Sc4wPfr_341	579915	579966	+	H. vulgaris	H. vulgaris	No
Hvu-Novel-9	None	HVU-NOVEL-9	AACUUUG	None	None	Sc4wPfr_1096	115465	115515	-	H. vulgaris	H. vulgaris	No
Hvu-Novel-10	None	HVU-NOVEL-10	CCAAAUA	None	None	Sc4wPfr_14	286657	286707	+	H. vulgaris	H. vulgaris	No		1
Hvu-Novel-11	None	HVU-NOVEL-11	AGCUCUU	None	None	Sc4wPfr_166.1	232089	232140	+	H. vulgaris	H. vulgaris	No
Hvu-Novel-12	None	HVU-NOVEL-12	UUCAUUA	None	None	Sc4wPfr_92	465151	465200	-	H. vulgaris	H. vulgaris	No		1
Hvu-Novel-13	None	HVU-NOVEL-13	CCAAAUG	None	None	Sc4wPfr_385	256480	256529	+	H. vulgaris	H. vulgaris	No
Hvu-Novel-14	None	HVU-NOVEL-14	AUGUUGA	None	None	Sc4wPfr_1761	52941	52992	-	H. vulgaris	H. vulgaris	No
Hvu-Novel-15	None	HVU-NOVEL-15	GACAUAG	None	None	Sc4wPfr_226.1	1498610	1498660	+	H. vulgaris	H. vulgaris	No

Download sequences for: precursor | 5p | 3p | mature | star | mature/star | loop | extend_pre | all