MirGeneDB ID | Hvu-Novel-3-v2 |
Family name |
HVU-NOVEL-3 (all species) |
Seed |
UAUGCUU |
Species |
Freshwater-polyp (Hydra vulgaris) |
MiRBase ID |
|
Paralogues |
Hvu-Novel-3-v1
|
Orthologues |
|
Node of Origin (locus) |
H. vulgaris
|
Node of Origin (family) |
H. vulgaris
|
Genome context (Hm105_1.0) |
Sc4wPfr_1174: 5861-5911 [-]
|
Precursor (pre-Mir +30nt flank) |
UGAAAAACUUAAAUUUGCGAAUAAUUUACCUGAUUAUAAUAAAAGCAUAAAUGAAAAGUUUAUGCUUUUGCUAUAUUCAGGUAAAUCAAACAAAAAGCAAUUUAGAAAUAU
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|
Structure | 10 20 30 40 50
UGAAAAACUUAAAUUUGCGAAUA--| U A GA
AUUUACCUGA UAUA UAAAAGCAUAAAU \
UAAAUGGACU AUAU GUUUUCGUAUUUG A
UAUAAAGAUUUAACGAAAAACAAAC^ U C AA
. 100 90 80 70 60 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Hvu-Novel-3-v2_5p* |
mirBase accession | None |
Sequence |
0- UGAUUAUAAUAAAAGCAUAAAU -22
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|
Mature sequence |
Hvu-Novel-3-v2_3p |
mirBase accession | None |
Sequence |
29- UUAUGCUUUUGCUAUAUUCAGG -51
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|