MirGeneDB 3.0

MirGeneDB ID

Hvu-Novel-3-v2

Family name HVU-NOVEL-3 (all species)
Seed UAUGCUU
Species Freshwater-polyp (Hydra vulgaris)
MiRBase ID
Paralogues Hvu-Novel-3-v1 
Orthologues
Node of Origin (locus) H. vulgaris
Node of Origin (family) H. vulgaris
Genome context
(Hm105_1.0)
Sc4wPfr_1174: 5861-5911 [-]
Precursor
(pre-Mir +30nt flank)
UGAAAAACUUAAAUUUGCGAAUAAUUUACCUGAUUAUAAUAAAAGCAUAAAUGAAAAGUUUAUGCUUUUGCUAUAUUCAGGUAAAUCAAACAAAAAGCAAUUUAGAAAUAU
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Structure
        10        20          30        40        50     
UGAAAAACUUAAAUUUGCGAAUA--|         U    A             GA 
                         AUUUACCUGA UAUA UAAAAGCAUAAAU  \
                         UAAAUGGACU AUAU GUUUUCGUAUUUG  A
UAUAAAGAUUUAACGAAAAACAAAC^         U    C             AA 
 .       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Fo Fo Fo Un
Star sequence

Hvu-Novel-3-v2_5p*

mirBase accessionNone
Sequence
0- UGAUUAUAAUAAAAGCAUAAAU -22
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Mature sequence

Hvu-Novel-3-v2_3p

mirBase accessionNone
Sequence
29- UUAUGCUUUUGCUAUAUUCAGG -51
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