| MirGeneDB ID | Hvu-Novel-10 |
|---|
| Family name |
HVU-NOVEL-10 (all species) |
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| Seed |
CCAAAUA |
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| Species |
Freshwater-polyp (Hydra vulgaris) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
H. vulgaris
|
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| Node of Origin (family) |
H. vulgaris
|
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Genome context
(Hm105_1.0) |
Sc4wPfr_14: 286657-286707 [+]
|
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Precursor
(pre-Mir +30nt flank) |
AUUAGUGUCAUAAAUAUAAUAUAAAAAAUCUCCAAAUAUAUUAUAAAGACGGUGUUACCGUCUUUAGAAUAUAUGUGGAGAUAUAAUAUAUUGGAGUUUUUGUUACCGGUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUUAGUGUCAUAAAUAU--| AAAA A A GUG
AAUAUA AUCUCCA AUAUAUU UAAAGACG \
UUAUAU UAGAGGU UAUAUAA AUUUCUGC U
AUGGCCAUUGUUUUUGAGG^ AAUA G G CAU
. 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Hvu-Novel-10_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UCCAAAUAUAUUAUAAAGACG -21
Get sequence
|
|---|
| Star sequence |
Hvu-Novel-10_3p* |
| mirBase accession | None |
|---|
| Sequence |
30- UCUUUAGAAUAUAUGUGGAGA -51
Get sequence
|
|---|
